MGE detailed information
MGE type: Conjugative plasmid MGE length: 147532 bp
Accession: NZ_CP057244 Location: 1..147532 Organism: Escherichia fergusonii strain RHB32-C05 Replicon: plasmid pRHB32-C05_2
Accession: NZ_CP057244 Location: 1..147532 Organism: Escherichia fergusonii strain RHB32-C05 Replicon: plasmid pRHB32-C05_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HVY96_RS22885 () | 1..978 | + | 978 | WP_089580515.1 | RepB family plasmid replication initiator protein | - |
| HVY96_RS22890 () | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| HVY96_RS22895 () | 2124..2264 | - | 141 | WP_089587962.1 | transcriptional regulator | - |
| HVY96_RS22900 () | 2893..3150 | + | 258 | WP_181667528.1 | hypothetical protein | - |
| HVY96_RS22905 () | 3692..4384 | - | 693 | WP_181667527.1 | hypothetical protein | VF |
| HVY96_RS22910 () | 4377..6785 | - | 2409 | WP_181667526.1 | hypothetical protein | VF |
| HVY96_RS22915 () | 6985..7509 | - | 525 | WP_181667525.1 | hypothetical protein | VF |
| HVY96_RS22920 () | 8290..9270 | - | 981 | WP_000019441.1 | IS5 family transposase ISKpn26 | Transposase |
| HVY96_RS22925 () | 9505..10104 | - | 600 | WP_181670300.1 | hypothetical protein | - |
| HVY96_RS22930 () | 11466..11804 | + | 339 | WP_181667524.1 | hypothetical protein | - |
| HVY96_RS22935 () | 12126..12926 | - | 801 | WP_181667523.1 | hypothetical protein | - |
| HVY96_RS22940 () | 13364..14068 | - | 705 | WP_180932806.1 | hypothetical protein | VF |
| HVY96_RS22945 () | 17447..19801 | + | 2355 | WP_181667522.1 | hypothetical protein | VF |
| HVY96_RS22950 () | 19990..20217 | - | 228 | Protein_13 | IS256 family transposase ISEic2 | Transposase |
| HVY96_RS22955 () | 20376..21892 | + | 1517 | Protein_14 | IS3 family transposase ISAs9 | Transposase |
| HVY96_RS22960 () | 21884..21985 | + | 102 | Protein_15 | IS3 family transposase ISAs9 | Transposase |
| HVY96_RS22965 () | 22018..22122 | - | 105 | Protein_16 | IS66 family insertion sequence element accessory protein TnpB | - |
| HVY96_RS22970 () | 22109..22438 | - | 330 | WP_158121923.1 | IS66 family transposase ISEc49 | Transposase |
| HVY96_RS22975 () | 22530..23168 | - | 639 | WP_181667521.1 | ParB N-terminal domain-containing protein | - |
| HVY96_RS22980 () | 23153..24382 | - | 1230 | WP_181667531.1 | phosphoadenosine phosphosulfate reductase | - |
| HVY96_RS22985 () | 25036..25875 | - | 840 | WP_158121898.1 | HTH-type transcriptional activator RhaR | VF |
| HVY96_RS22990 () | 25896..26453 | - | 558 | WP_181670301.1 | hypothetical protein | - |
| HVY96_RS22995 () | 26811..27956 | - | 1146 | WP_181667519.1 | DUF4056 domain-containing protein | - |
| HVY96_RS23000 () | 28049..28300 | - | 252 | WP_158121896.1 | hypothetical protein | - |
| HVY96_RS23005 () | 28517..29464 | - | 948 | WP_158121895.1 | hypothetical protein | - |
| HVY96_RS23010 () | 29476..30417 | - | 942 | WP_158121894.1 | VirK/YbjX family protein | - |
| HVY96_RS23015 () | 30499..31596 | - | 1098 | WP_172746862.1 | glycosyltransferase family 4 protein | - |
| HVY96_RS23020 () | 31606..32436 | - | 831 | WP_181667518.1 | polysaccharide deacetylase family protein | - |
| HVY96_RS23025 () | 32621..33526 | - | 906 | WP_158121933.1 | HTH-type transcriptional activator RhaR | VF |
| HVY96_RS23030 () | 33832..34071 | - | 240 | WP_181667530.1 | hypothetical protein | VF |
| HVY96_RS23035 () | 34229..36325 | - | 2097 | WP_181666769.1 | ATP-binding protein | - |
| HVY96_RS23040 () | 36341..36892 | - | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| HVY96_RS23045 () | 37056..40064 | + | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| HVY96_RS23050 () | 40098..40541 | - | 444 | Protein_33 | IS66 family transposase ISEc8 | Transposase |
| HVY96_RS23055 () | 40591..40938 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| HVY96_RS23060 () | 40935..41315 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| HVY96_RS23065 () | 41417..41622 | + | 206 | Protein_36 | sulfite reductase subunit C | - |
| HVY96_RS23070 () | 41772..45671 | - | 3900 | WP_181670302.1 | hypothetical protein | VF |
| HVY96_RS23075 () | 45710..46594 | - | 885 | WP_181670303.1 | fimbrial | - |
| HVY96_RS23080 () | 46572..46814 | - | 243 | WP_072135115.1 | hypothetical protein | - |
| HVY96_RS23085 () | 46881..48453 | - | 1573 | Protein_40 | IS66 family transposase ISCro1 | Transposase |
| HVY96_RS23090 () | 48473..48820 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| HVY96_RS23095 () | 48820..49470 | - | 651 | WP_181670304.1 | IS66 family transposase IS679 | Transposase |
| HVY96_RS23100 () | 49803..51143 | - | 1341 | WP_181667515.1 | sensor domain-containing diguanylate cyclase | - |
| HVY96_RS23105 () | 51526..52566 | - | 1041 | WP_053265825.1 | hypothetical protein | - |
| HVY96_RS23110 () | 52899..53657 | - | 759 | WP_053265824.1 | AraC family transcriptional regulator | - |
| HVY96_RS23115 () | 54229..54336 | + | 108 | Protein_46 | IS66 family insertion sequence element accessory protein TnpB | - |
| HVY96_RS23120 () | 54333..54683 | + | 351 | WP_000624677.1 | IS66 family transposase IS682 | Transposase |
| HVY96_RS23125 () | 54714..56305 | + | 1592 | Protein_48 | IS66 family transposase ISEc47 | Transposase |
| HVY96_RS23130 () | 56768..57850 | - | 1083 | WP_181670305.1 | hypothetical protein | - |
| HVY96_RS23135 () | 57910..60546 | - | 2637 | WP_181576143.1 | TcfC E-set like domain-containing protein | - |
| HVY96_RS23140 () | 60585..61085 | - | 501 | WP_181576142.1 | hypothetical protein | VF |
| HVY96_RS23145 () | 61150..61878 | - | 729 | WP_021555111.1 | putative fimbrial chaperone EcpE | VF |
| HVY96_RS23150 () | 62111..62808 | - | 698 | Protein_53 | IS1 family transposase IS1G | Transposase |
| HVY96_RS23155 () | 63641..64006 | + | 366 | WP_000124135.1 | hypothetical protein | - |
| HVY96_RS23160 () | 64006..65021 | + | 1016 | Protein_55 | IS91 family transposase ISEc37 | Transposase |
| HVY96_RS23165 () | 65204..66700 | - | 1497 | Protein_56 | hypothetical protein | - |
| HVY96_RS23170 () | 67180..67461 | - | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| HVY96_RS23175 () | 67458..67727 | - | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| HVY96_RS23180 () | 68641..69498 | - | 858 | WP_000131011.1 | incFII family plasmid replication initiator RepA | - |
| HVY96_RS23185 () | 69491..69565 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| HVY96_RS23190 () | 69812..70060 | - | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| HVY96_RS23195 () | 70344..70550 | - | 207 | WP_001553767.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 70537..70598 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 70537..70598 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 70537..70598 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 70537..70598 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| HVY96_RS23200 () | 71258..71719 | - | 462 | WP_047649930.1 | thermonuclease family protein | - |
| HVY96_RS23205 () | 72462..72665 | - | 204 | WP_040073114.1 | hypothetical protein | - |
| HVY96_RS23210 () | 72820..73377 | - | 558 | WP_047649932.1 | fertility inhibition protein FinO | - |
| HVY96_RS23215 () | 73480..74340 | - | 861 | WP_000704529.1 | hypothetical protein | VF |
| HVY96_RS23220 () | 74399..75139 | - | 741 | WP_094259392.1 | conjugal transfer pilus acetylase TraX | - |
| HVY96_RS23225 () | 75159..80429 | - | 5271 | WP_137546095.1 | Multifunctional conjugation protein TraI | Relaxase |
| HVY96_RS23230 () | 80511..80738 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| HVY96_RS23235 () | 80738..81136 | + | 399 | WP_000911313.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| HVY96_RS23240 () | 81145..83388 | - | 2244 | WP_181670297.1 | type IV conjugative transfer system coupling protein TraD | - |
| HVY96_RS23245 () | 83439..84179 | - | 741 | WP_151674032.1 | hypothetical protein | - |
| HVY96_RS23250 () | 84382..85113 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| HVY96_RS23255 () | 85145..85642 | - | 498 | WP_137546094.1 | surface exclusion protein | - |
| HVY96_RS23260 () | 85667..88486 | - | 2820 | WP_151674034.1 | conjugal transfer mating pair stabilization protein TraG | - |
| HVY96_RS23265 () | 88483..89856 | - | 1374 | WP_181667510.1 | conjugal transfer protein TraH | - |
| HVY96_RS23270 () | 89856..90269 | - | 414 | WP_094259396.1 | F-type conjugal transfer protein TrbF | - |
| HVY96_RS23275 () | 90223..90563 | - | 341 | Protein_78 | P-type conjugative transfer protein TrbJ | - |
| HVY96_RS23280 () | 90493..91038 | - | 546 | WP_000059821.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| HVY96_RS23285 () | 91025..91306 | - | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| HVY96_RS23290 () | 91422..92165 | - | 744 | WP_181667534.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| HVY96_RS23295 () | 92158..92418 | - | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| HVY96_RS23300 () | 92445..94253 | - | 1809 | WP_040100300.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| HVY96_RS23305 () | 94250..94888 | - | 639 | WP_000777692.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HVY96_RS23310 () | 94897..95889 | - | 993 | WP_040100302.1 | conjugal transfer pilus assembly protein TraU | - |
| HVY96_RS23315 () | 95886..96518 | - | 633 | WP_181667509.1 | type-F conjugative transfer system protein TraW | - |
| HVY96_RS23320 () | 96515..96895 | - | 381 | WP_040100306.1 | type-F conjugative transfer system protein TrbI | - |
| HVY96_RS23325 () | 96979..98085 | + | 1107 | WP_181667508.1 | hypothetical protein | - |
| HVY96_RS23330 () | 98467..101112 | - | 2646 | WP_105466876.1 | type IV secretion system protein TraC | - |
| HVY96_RS23335 () | 101238..101585 | - | 348 | WP_105466875.1 | hypothetical protein | - |
| HVY96_RS23340 () | 101582..101986 | - | 405 | WP_105466874.1 | hypothetical protein | - |
| HVY96_RS23345 () | 102280..102705 | - | 426 | WP_181667507.1 | hypothetical protein | - |
| HVY96_RS23350 () | 102886..104427 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| HVY96_RS23355 () | 104442..105188 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| HVY96_RS23360 () | 105333..105554 | - | 222 | WP_105466872.1 | conjugal transfer protein TraR | - |
| HVY96_RS23365 () | 105688..106203 | - | 516 | WP_105466871.1 | type IV conjugative transfer system lipoprotein TraV | - |
| HVY96_RS23370 () | 106200..106568 | - | 369 | WP_105466870.1 | conjugal transfer protein TrbD | - |
| HVY96_RS23375 () | 106507..107097 | - | 591 | WP_000002784.1 | conjugal transfer protein TraP | - |
| HVY96_RS23380 () | 107087..108514 | - | 1428 | WP_000146635.1 | conjugal transfer protein TraB | - |
| HVY96_RS23385 () | 108514..109218 | - | 705 | WP_151674057.1 | type-F conjugative transfer system secretin TraK | - |
| HVY96_RS23390 () | 109229..109795 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| HVY96_RS23395 () | 109817..110128 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| HVY96_RS23400 () | 110143..110508 | - | 366 | WP_040100313.1 | type IV conjugative transfer system pilin TraA | - |
| HVY96_RS23405 () | 110542..110769 | - | 228 | WP_072039828.1 | conjugal transfer relaxosome protein TraY | - |
| HVY96_RS23410 () | 110907..111578 | - | 672 | WP_040100314.1 | conjugal transfer transcriptional regulator TraJ | - |
| HVY96_RS23415 () | 111773..112156 | - | 384 | WP_040100321.1 | relaxosome protein TraM | - |
| HVY96_RS23420 () | 112479..113081 | + | 603 | WP_072156291.1 | hypothetical protein | VF |
| HVY96_RS23425 () | 113378..114199 | - | 822 | WP_042973148.1 | DUF945 domain-containing protein | - |
| HVY96_RS23430 () | 114318..114605 | - | 288 | WP_021569031.1 | hypothetical protein | - |
| HVY96_RS23435 () | 115504..115665 | - | 162 | WP_000775236.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 115711..115927 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| - () | 115711..115927 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| - () | 115711..115927 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| - () | 115711..115927 | - | 217 | NuclAT_0 | - | Antitoxin Detail |
| HVY96_RS23440 () | 115939..116658 | - | 720 | WP_042974070.1 | plasmid SOS inhibition protein A | - |
| HVY96_RS23445 () | 116655..117089 | - | 435 | WP_032235533.1 | conjugation system SOS inhibitor PsiB | - |
| HVY96_RS23450 () | 117144..119102 | - | 1959 | WP_181670298.1 | ParB/RepB/Spo0J family partition protein | - |
| HVY96_RS23455 () | 119168..119401 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| HVY96_RS23460 () | 119464..120006 | - | 543 | WP_042974074.1 | single-stranded DNA-binding protein | - |
| HVY96_RS23465 () | 120032..120238 | - | 207 | WP_077782986.1 | single-stranded DNA-binding protein | - |
| HVY96_RS23470 () | 120837..121400 | - | 564 | WP_042974077.1 | class I SAM-dependent methyltransferase | - |
| HVY96_RS23475 () | 121448..122809 | - | 1362 | WP_097418948.1 | DUF3560 domain-containing protein | - |
| HVY96_RS23480 () | 122861..123091 | - | 231 | WP_000218655.1 | hypothetical protein | - |
| HVY96_RS23485 () | 123766..124091 | + | 326 | Protein_120 | pilus assembly protein | - |
| HVY96_RS23490 () | 124061..124252 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| HVY96_RS23495 () | 124249..124671 | - | 423 | WP_097418949.1 | DUF1380 family protein | - |
| HVY96_RS23500 () | 124718..125020 | - | 303 | WP_181670306.1 | antirestriction protein | - |
| HVY96_RS23505 () | 125556..126326 | - | 771 | WP_181670299.1 | hypothetical protein | - |
| HVY96_RS23510 () | 126371..126805 | - | 435 | WP_097418950.1 | DUF1380 family protein | - |
| HVY96_RS23515 () | 126819..127040 | - | 222 | WP_001104885.1 | hypothetical protein | - |
| HVY96_RS23520 () | 127041..127724 | - | 684 | WP_000086174.1 | DNA methylase | - |
| HVY96_RS23525 () | 127801..128070 | - | 270 | WP_181667533.1 | hypothetical protein | - |
| HVY96_RS23530 () | 128067..128962 | - | 896 | Protein_129 | DUF1281 domain-containing protein | - |
| HVY96_RS23535 () | 129039..130763 | - | 1725 | WP_181667502.1 | group II intron reverse transcriptase/maturase | - |
| HVY96_RS23540 () | 131786..132034 | + | 249 | WP_097418965.1 | DinI-like family protein | - |
| HVY96_RS23545 () | 132031..132468 | + | 438 | WP_097418953.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| HVY96_RS23550 () | 132468..133738 | + | 1271 | Protein_133 | translesion error-prone DNA polymerase V subunit UmuC | - |
| HVY96_RS23555 () | 133743..134135 | - | 393 | WP_000340833.1 | plasmid partitioning/stability family protein | - |
| HVY96_RS23560 () | 134140..135111 | - | 972 | WP_097418955.1 | plasmid segregation protein parM | - |
| HVY96_RS23565 () | 135340..135984 | + | 645 | WP_000633911.1 | AAA family ATPase | - |
| HVY96_RS23570 () | 135978..136253 | + | 276 | WP_097418957.1 | CopG family transcriptional regulator | - |
| HVY96_RS23575 () | 136391..137200 | - | 810 | WP_097418958.1 | site-specific integrase | - |
| HVY96_RS23580 () | 137201..137506 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| HVY96_RS23585 () | 137508..137726 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| HVY96_RS23590 () | 138286..138516 | + | 231 | WP_097309516.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| HVY96_RS23595 () | 138513..138929 | + | 417 | WP_097418959.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| HVY96_RS23600 () | 138974..142768 | - | 3795 | WP_175616550.1 | pcar | - |
| HVY96_RS23605 () | 143117..143374 | + | 258 | WP_000343099.1 | hypothetical protein | - |
| HVY96_RS23610 () | 143374..143997 | + | 624 | WP_181667529.1 | hypothetical protein | - |
| HVY96_RS23615 () | 144059..144271 | - | 213 | WP_097330523.1 | hypothetical protein | - |
| HVY96_RS23620 () | 144586..145446 | - | 861 | WP_000704533.1 | hypothetical protein | VF |
| HVY96_RS23625 () | 145609..145710 | - | 102 | WP_071598326.1 | transposase domain-containing protein | - |
| HVY96_RS23630 () | 146015..146284 | + | 270 | WP_039587803.1 | hypothetical protein | - |
| HVY96_RS23635 () | 146272..146755 | + | 484 | Protein_150 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|