MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_CP055259 Location: 615158..626830 Organism: Escherichia coli strain AH62 Replicon: chromosome
Accession: NZ_CP055259 Location: 615158..626830 Organism: Escherichia coli strain AH62 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU676_RS02920 () | 610159..610593 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| HU676_RS02925 () | 610611..611489 | - | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HU676_RS02930 () | 611479..612258 | - | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| HU676_RS02935 () | 612269..612742 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| HU676_RS02940 () | 612765..614045 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| HU676_RS02945 () | 614294..615103 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| HU676_RS02950 () | 615158..615622 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| HU676_RS02955 () | 615622..615957 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| HU676_RS02960 () | 616106..617677 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| HU676_RS02965 () | 618052..619386 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| HU676_RS02970 () | 619402..620172 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| HU676_RS02975 () | 620202..621092 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| HU676_RS02980 () | 621189..622334 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| HU676_RS02990 () | 623357..624544 | - | 1188 | WP_176256437.1 | YhaC family protein | - |
| HU676_RS02995 () | 624566..624852 | - | 287 | Protein_585 | hypothetical protein | - |
| HU676_RS03000 () | 624862..625104 | - | 243 | WP_123009844.1 | hypothetical protein | - |
| HU676_RS03005 () | 625360..625704 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| HU676_RS03010 () | 625892..626830 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| HU676_RS03015 () | 626929..627918 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| HU676_RS03020 () | 627940..629271 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| HU676_RS03025 () | 629297..630505 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |