MGE detailed information
MGE type: Prophage MGE length: 26869 bp
Accession: NZ_CP053603 Location: 1615047..1641915 Organism: Escherichia coli strain Dam/Dcm Replicon: chromosome
Accession: NZ_CP053603 Location: 1615047..1641915 Organism: Escherichia coli strain Dam/Dcm Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO395_RS07750 () | 1611562..1612308 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| HO395_RS07755 () | 1612397..1613083 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| HO395_RS07760 () | 1613260..1613463 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| HO395_RS07765 () | 1613498..1614958 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| HO395_RS07770 () | 1615047..1616330 | - | 1284 | WP_000347482.1 | MHS family MFS transporter | - |
| HO395_RS07775 () | 1616935..1617048 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HO395_RS07780 () | 1617117..1617350 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HO395_RS07785 () | 1617667..1618257 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| HO395_RS07790 () | 1618355..1618930 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| HO395_RS07795 () | 1618930..1619892 | - | 963 | WP_001027733.1 | phage tail protein | - |
| HO395_RS07800 () | 1619843..1620412 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| HO395_RS07805 () | 1620801..1621034 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| HO395_RS07810 () | 1621092..1621502 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| HO395_RS07815 () | 1621654..1621827 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| HO395_RS07820 () | 1621999..1622154 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| HO395_RS07825 () | 1622233..1622298 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| HO395_RS07830 () | 1622301..1622489 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| HO395_RS07835 () | 1622500..1622712 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| HO395_RS07840 () | 1623075..1623572 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| HO395_RS07845 () | 1623569..1624102 | - | 534 | WP_001092971.1 | lysozyme | - |
| HO395_RS07850 () | 1624099..1624410 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| HO395_RS07855 () | 1624415..1624630 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| HO395_RS07860 () | 1625384..1625599 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| HO395_RS07865 () | 1625900..1626112 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| HO395_RS07870 () | 1626167..1626256 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| HO395_RS07875 () | 1626534..1627286 | - | 753 | WP_001047135.1 | antitermination protein | - |
| HO395_RS07880 () | 1627300..1628349 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| HO395_RS07885 () | 1628351..1628629 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| HO395_RS07890 () | 1628696..1628947 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| HO395_RS07895 () | 1629164..1629319 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| HO395_RS07900 () | 1629391..1629678 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HO395_RS07905 () | 1629678..1629917 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HO395_RS07910 () | 1629942..1630247 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| HO395_RS07915 () | 1630450..1630782 | + | 333 | WP_001301033.1 | protein FlxA | - |
| HO395_RS07920 () | 1631219..1631368 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| HO395_RS07925 () | 1631403..1631681 | - | 279 | Protein_1548 | hypothetical protein | - |
| HO395_RS07930 () | 1631665..1631895 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| HO395_RS07935 () | 1631979..1632386 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| HO395_RS07940 () | 1632553..1632708 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| HO395_RS07945 () | 1632868..1633086 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| HO395_RS07950 () | 1633090..1633254 | - | 165 | WP_014639039.1 | hypothetical protein | - |
| HO395_RS07955 () | 1633654..1633842 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| HO395_RS07960 () | 1633839..1634030 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| HO395_RS07965 () | 1634123..1634890 | + | 768 | Protein_1556 | exonuclease | - |
| HO395_RS07970 () | 1634887..1635582 | + | 696 | Protein_1557 | IS3 family transposase IS2 | Transposase |
| HO395_RS07975 () | 1635596..1636753 | + | 1158 | Protein_1558 | Tyrosine recombinase XerD ; Integrase | Integrase |
| HO395_RS07980 () | 1636773..1636883 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| HO395_RS07985 () | 1636941..1637960 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| HO395_RS07990 () | 1637972..1639186 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| HO395_RS07995 () | 1639392..1639718 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| HO395_RS08000 () | 1639853..1640194 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| HO395_RS08005 () | 1640229..1640789 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| HO395_RS08010 () | 1640792..1641502 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| HO395_RS08015 () | 1641610..1641915 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| HO395_RS08020 () | 1642114..1644540 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.007 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.006 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.006 |