MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP045190 Location: 605445..617119 Organism: Escherichia coli strain NT1F31 Replicon: chromosome
Accession: NZ_CP045190 Location: 605445..617119 Organism: Escherichia coli strain NT1F31 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GAG93_RS04020 () | 600446..600880 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| GAG93_RS04025 () | 600898..601776 | - | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| GAG93_RS04030 () | 601766..602545 | - | 780 | WP_156262346.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| GAG93_RS04035 () | 602556..603029 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| GAG93_RS04040 () | 603052..604332 | - | 1281 | WP_096178318.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| GAG93_RS04045 () | 604581..605390 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| GAG93_RS04050 () | 605445..605909 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| GAG93_RS04055 () | 605909..606244 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| GAG93_RS04060 () | 606393..607964 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| GAG93_RS04065 () | 608339..609673 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| GAG93_RS04070 () | 609689..610459 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| GAG93_RS04075 () | 610489..611379 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| GAG93_RS04080 () | 611476..612621 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| GAG93_RS04090 () | 613644..614831 | - | 1188 | WP_122056829.1 | YhaC family protein | - |
| GAG93_RS04095 () | 614853..615392 | - | 540 | WP_040061853.1 | hypothetical protein | - |
| GAG93_RS04100 () | 615648..615992 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| GAG93_RS04105 () | 616181..617119 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| GAG93_RS04110 () | 617218..618207 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| GAG93_RS04115 () | 618229..619560 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| GAG93_RS04120 () | 619586..620794 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |