MGE detailed information
MGE type: Prophage MGE length: 40359 bp
Accession: NZ_CP043197 Location: 4199959..4240317 Organism: Escherichia coli O16:H48 strain PG20180061 Replicon: chromosome
Accession: NZ_CP043197 Location: 4199959..4240317 Organism: Escherichia coli O16:H48 strain PG20180061 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA12_RS20340 () | 4195858..4197078 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| FYA12_RS20345 () | 4197203..4197898 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| FYA12_RS20350 () | 4197851..4199143 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| FYA12_RS20355 () | 4199302..4199916 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| FYA12_RS20360 () | 4199959..4200813 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| FYA12_RS20365 () | 4200815..4201432 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| FYA12_RS20370 () | 4201443..4203866 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA12_RS20375 () | 4203927..4206353 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA12_RS20380 () | 4206552..4206857 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| FYA12_RS20385 () | 4206965..4207675 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| FYA12_RS20390 () | 4207678..4208238 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FYA12_RS20395 () | 4208273..4208614 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FYA12_RS20400 () | 4208749..4209075 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| FYA12_RS20405 () | 4209281..4210495 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FYA12_RS20410 () | 4210507..4211526 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FYA12_RS20420 () | 4211714..4212871 | - | 1158 | Protein_3957 | Putative defective protein IntQ ; Integrase | Integrase |
| FYA12_RS20425 () | 4212885..4213580 | - | 696 | Protein_3958 | IS3 family transposase IS2 | Transposase |
| FYA12_RS20430 () | 4213577..4214344 | - | 768 | Protein_3959 | exonuclease | - |
| FYA12_RS20435 () | 4214437..4214628 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FYA12_RS20440 () | 4214625..4214813 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FYA12_RS20450 () | 4215381..4215599 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| FYA12_RS20455 () | 4215759..4215914 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FYA12_RS20460 () | 4216081..4216488 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FYA12_RS20465 () | 4216572..4216802 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FYA12_RS20470 () | 4216786..4217064 | + | 279 | Protein_3966 | hypothetical protein | - |
| FYA12_RS20475 () | 4217099..4217248 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| FYA12_RS20480 () | 4217685..4218017 | - | 333 | WP_001301033.1 | protein FlxA | - |
| FYA12_RS20485 () | 4218220..4218525 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| FYA12_RS20490 () | 4218550..4218789 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FYA12_RS20495 () | 4218789..4219076 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FYA12_RS20500 () | 4219148..4219303 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FYA12_RS20505 () | 4219520..4219771 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| FYA12_RS20510 () | 4219838..4220116 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| FYA12_RS20515 () | 4220118..4221167 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FYA12_RS20520 () | 4221181..4221933 | + | 753 | WP_001047135.1 | antitermination protein | - |
| FYA12_RS20525 () | 4222211..4222300 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| FYA12_RS20530 () | 4222355..4222567 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FYA12_RS20535 () | 4222868..4223083 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FYA12_RS23050 () | 4223447..4223617 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FYA12_RS20540 () | 4223837..4224052 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FYA12_RS20545 () | 4224057..4224368 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| FYA12_RS20550 () | 4224365..4224898 | + | 534 | WP_001092971.1 | lysozyme | - |
| FYA12_RS20555 () | 4224895..4225392 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FYA12_RS20560 () | 4225755..4225967 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FYA12_RS20565 () | 4225978..4226166 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| FYA12_RS20570 () | 4226169..4226234 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| FYA12_RS20575 () | 4226313..4226468 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| FYA12_RS20580 () | 4226640..4226813 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FYA12_RS20585 () | 4226965..4227375 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FYA12_RS20590 () | 4227433..4227666 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FYA12_RS20595 () | 4228055..4228624 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| FYA12_RS20600 () | 4228575..4229537 | + | 963 | WP_001027733.1 | phage tail protein | - |
| FYA12_RS20605 () | 4229537..4230112 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| FYA12_RS20610 () | 4230210..4230800 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FYA12_RS20615 () | 4231117..4231350 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FYA12_RS20620 () | 4231419..4231532 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FYA12_RS20625 () | 4232053..4233420 | + | 1368 | Protein_3998 | MHS family MFS transporter | - |
| FYA12_RS20630 () | 4233509..4234969 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FYA12_RS20635 () | 4235004..4235207 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FYA12_RS20640 () | 4235384..4236070 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FYA12_RS20645 () | 4236159..4236905 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| FYA12_RS20650 () | 4237042..4239087 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| FYA12_RS20655 () | 4239131..4239649 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| FYA12_RS20660 () | 4239925..4240317 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| FYA12_RS20665 () | 4240572..4241462 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| FYA12_RS23055 () | 4241577..4241681 | - | 105 | WP_211180496.1 | protein MgtT | - |
| FYA12_RS20670 () | 4241681..4241776 | - | 96 | WP_000901367.1 | protein MgtS | - |
| FYA12_RS20675 () | 4241903..4243090 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| FYA12_RS20680 () | 4243285..4244184 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| FYA12_RS20685 () | 4244215..4244433 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| FYA12_RS20690 () | 4244465..4244848 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| FYA12_RS20695 () | 4244868..4245302 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.005 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.005 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |