MGE detailed information
MGE type: Prophage MGE length: 40359 bp
Accession: NZ_CP043195 Location: 2508272..2548630 Organism: Escherichia coli O16:H48 strain PG20180062 Replicon: chromosome
Accession: NZ_CP043195 Location: 2508272..2548630 Organism: Escherichia coli O16:H48 strain PG20180062 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA13_RS12025 () | 2504171..2505391 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| FYA13_RS12030 () | 2505516..2506211 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| FYA13_RS12035 () | 2506164..2507456 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| FYA13_RS12040 () | 2507615..2508229 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| FYA13_RS12045 () | 2508272..2509126 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| FYA13_RS12050 () | 2509128..2509745 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| FYA13_RS12055 () | 2509756..2512179 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA13_RS12060 () | 2512240..2514666 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| FYA13_RS12065 () | 2514865..2515170 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| FYA13_RS12070 () | 2515278..2515988 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| FYA13_RS12075 () | 2515991..2516551 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| FYA13_RS12080 () | 2516586..2516927 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| FYA13_RS12085 () | 2517062..2517388 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| FYA13_RS12090 () | 2517594..2518808 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| FYA13_RS12095 () | 2518820..2519839 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| FYA13_RS12105 () | 2520027..2521184 | - | 1158 | Protein_2344 | Putative defective protein IntQ ; Integrase | Integrase |
| FYA13_RS12110 () | 2521198..2521893 | - | 696 | Protein_2345 | IS3 family transposase IS2 | Transposase |
| FYA13_RS12115 () | 2521890..2522657 | - | 768 | Protein_2346 | exonuclease | - |
| FYA13_RS12120 () | 2522750..2522941 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| FYA13_RS12125 () | 2522938..2523126 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| FYA13_RS12135 () | 2523694..2523912 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| FYA13_RS12140 () | 2524072..2524227 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| FYA13_RS12145 () | 2524394..2524801 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| FYA13_RS12150 () | 2524885..2525115 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| FYA13_RS12155 () | 2525099..2525377 | + | 279 | Protein_2353 | hypothetical protein | - |
| FYA13_RS12160 () | 2525412..2525561 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| FYA13_RS12165 () | 2525998..2526330 | - | 333 | WP_001301033.1 | protein FlxA | - |
| FYA13_RS12170 () | 2526533..2526838 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| FYA13_RS12175 () | 2526863..2527102 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| FYA13_RS12180 () | 2527102..2527389 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| FYA13_RS12185 () | 2527461..2527616 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| FYA13_RS12190 () | 2527833..2528084 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| FYA13_RS12195 () | 2528151..2528429 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| FYA13_RS12200 () | 2528431..2529480 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| FYA13_RS12205 () | 2529494..2530246 | + | 753 | WP_001047135.1 | antitermination protein | - |
| FYA13_RS12210 () | 2530524..2530613 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| FYA13_RS12215 () | 2530668..2530880 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| FYA13_RS12220 () | 2531181..2531396 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| FYA13_RS23350 () | 2531760..2531930 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| FYA13_RS12225 () | 2532150..2532365 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| FYA13_RS12230 () | 2532370..2532681 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| FYA13_RS12235 () | 2532678..2533211 | + | 534 | WP_001092971.1 | lysozyme | - |
| FYA13_RS12240 () | 2533208..2533705 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| FYA13_RS12245 () | 2534068..2534280 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| FYA13_RS12250 () | 2534291..2534479 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| FYA13_RS12255 () | 2534482..2534547 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| FYA13_RS12260 () | 2534626..2534781 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| FYA13_RS12265 () | 2534953..2535126 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| FYA13_RS12270 () | 2535278..2535688 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| FYA13_RS12275 () | 2535746..2535979 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| FYA13_RS12280 () | 2536368..2536937 | + | 570 | WP_000453588.1 | DNA-packaging protein | - |
| FYA13_RS12285 () | 2536888..2537850 | + | 963 | WP_001027733.1 | phage tail protein | - |
| FYA13_RS12290 () | 2537850..2538425 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| FYA13_RS12295 () | 2538523..2539113 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FYA13_RS12300 () | 2539430..2539663 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| FYA13_RS12305 () | 2539732..2539845 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FYA13_RS12310 () | 2540366..2541733 | + | 1368 | Protein_2385 | MHS family MFS transporter | - |
| FYA13_RS12315 () | 2541822..2543282 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| FYA13_RS12320 () | 2543317..2543520 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| FYA13_RS12325 () | 2543697..2544383 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| FYA13_RS12330 () | 2544472..2545218 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| FYA13_RS12335 () | 2545355..2547400 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| FYA13_RS12340 () | 2547444..2547962 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| FYA13_RS12345 () | 2548238..2548630 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| FYA13_RS12350 () | 2548885..2549775 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| FYA13_RS23355 () | 2549890..2549994 | - | 105 | WP_211180496.1 | protein MgtT | - |
| FYA13_RS12355 () | 2549994..2550089 | - | 96 | WP_000901367.1 | protein MgtS | - |
| FYA13_RS12360 () | 2550216..2551403 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| FYA13_RS12365 () | 2551598..2552497 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| FYA13_RS12370 () | 2552528..2552746 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| FYA13_RS12375 () | 2552778..2553161 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| FYA13_RS12380 () | 2553181..2553615 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.005 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |