MGE detailed information
MGE type: Prophage MGE length: 26869 bp
Accession: NZ_CP042865 Location: 2229091..2255959 Organism: Escherichia coli strain ATCC BAA-196 Replicon: chromosome
Accession: NZ_CP042865 Location: 2229091..2255959 Organism: Escherichia coli strain ATCC BAA-196 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAA196NC_RS10750 () | 2226466..2228892 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| BAA196NC_RS10755 () | 2229091..2229396 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| BAA196NC_RS10760 () | 2229504..2230214 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| BAA196NC_RS10765 () | 2230217..2230777 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| BAA196NC_RS10770 () | 2230812..2231153 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| BAA196NC_RS10775 () | 2231288..2231614 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| BAA196NC_RS10780 () | 2231820..2233034 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| BAA196NC_RS10785 () | 2233046..2234065 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| BAA196NC_RS10795 () | 2234253..2235410 | - | 1158 | Protein_2102 | Tyrosine recombinase XerD ; Integrase | Integrase |
| BAA196NC_RS10800 () | 2235424..2236119 | - | 696 | Protein_2103 | IS3 family transposase IS2 | Transposase |
| BAA196NC_RS10805 () | 2236116..2236883 | - | 768 | Protein_2104 | exonuclease | - |
| BAA196NC_RS10810 () | 2236976..2237167 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| BAA196NC_RS10815 () | 2237164..2237352 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| BAA196NC_RS10825 () | 2237920..2238138 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| BAA196NC_RS10830 () | 2238298..2238453 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| BAA196NC_RS10835 () | 2238620..2239027 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| BAA196NC_RS10840 () | 2239111..2239341 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| BAA196NC_RS10845 () | 2239325..2239603 | + | 279 | Protein_2111 | hypothetical protein | - |
| BAA196NC_RS10850 () | 2239638..2239787 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| BAA196NC_RS10855 () | 2240224..2240556 | - | 333 | WP_001301033.1 | protein FlxA | - |
| BAA196NC_RS10860 () | 2240759..2241064 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| BAA196NC_RS10865 () | 2241089..2241328 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| BAA196NC_RS10870 () | 2241328..2241615 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| BAA196NC_RS10875 () | 2241687..2241842 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| BAA196NC_RS10880 () | 2242059..2242310 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| BAA196NC_RS10885 () | 2242377..2242655 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| BAA196NC_RS10890 () | 2242657..2243706 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| BAA196NC_RS10895 () | 2243720..2244472 | + | 753 | WP_001047135.1 | antitermination protein | - |
| BAA196NC_RS10900 () | 2244750..2244839 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| BAA196NC_RS10905 () | 2244894..2245106 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| BAA196NC_RS10910 () | 2245407..2245622 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| BAA196NC_RS24525 () | 2245986..2246156 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| BAA196NC_RS10915 () | 2246376..2246591 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| BAA196NC_RS10920 () | 2246596..2246907 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| BAA196NC_RS10925 () | 2246904..2247437 | + | 534 | WP_001092971.1 | lysozyme | - |
| BAA196NC_RS10930 () | 2247434..2247931 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| BAA196NC_RS10935 () | 2248294..2248506 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| BAA196NC_RS10940 () | 2248517..2248705 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| BAA196NC_RS10945 () | 2248708..2248773 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| BAA196NC_RS10950 () | 2248852..2249007 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| BAA196NC_RS10955 () | 2249179..2249352 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| BAA196NC_RS10960 () | 2249504..2249914 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| BAA196NC_RS10965 () | 2249972..2250205 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| BAA196NC_RS10970 () | 2250594..2251163 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| BAA196NC_RS10975 () | 2251114..2252076 | + | 963 | WP_001027733.1 | phage tail protein | - |
| BAA196NC_RS10980 () | 2252076..2252651 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| BAA196NC_RS10985 () | 2252749..2253339 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| BAA196NC_RS10990 () | 2253656..2253889 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| BAA196NC_RS10995 () | 2253958..2254071 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| BAA196NC_RS11000 () | 2254592..2255959 | + | 1368 | Protein_2143 | MHS family MFS transporter | - |
| BAA196NC_RS11005 () | 2256048..2257508 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| BAA196NC_RS11010 () | 2257543..2257746 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| BAA196NC_RS11015 () | 2257923..2258609 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| BAA196NC_RS11020 () | 2258698..2259444 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.007 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.006 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.006 |