MGE detailed information
MGE type: Conjugative plasmid MGE length: 146792 bp
Accession: NZ_CP036244 Location: 1..146792 Organism: Escherichia coli strain S65EC Replicon: plasmid pS65EC
Accession: NZ_CP036244 Location: 1..146792 Organism: Escherichia coli strain S65EC Replicon: plasmid pS65EC
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
S65EC_RS00010 () | 803..1927 | + | 1125 | WP_032174239.1 | DUF4238 domain-containing protein | - |
S65EC_RS00015 () | 1927..2217 | + | 291 | WP_000648897.1 | hypothetical protein | - |
S65EC_RS00025 () | 2827..4383 | - | 1557 | WP_042068411.1 | AAA family ATPase | - |
S65EC_RS00030 () | 4648..5238 | - | 591 | WP_086732352.1 | hypothetical protein | - |
S65EC_RS00035 () | 5238..5495 | - | 258 | WP_000371887.1 | hypothetical protein | - |
S65EC_RS00040 () | 5824..6927 | + | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
S65EC_RS00045 () | 6957..8087 | + | 1131 | WP_086732353.1 | DUF4238 domain-containing protein | - |
S65EC_RS00055 () | 8209..8906 | + | 698 | Protein_8 | IS1 family transposase | - |
S65EC_RS00060 () | 8923..9270 | + | 348 | Protein_9 | ABC transporter permease subunit | - |
S65EC_RS00065 () | 9282..10328 | + | 1047 | WP_000192349.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
S65EC_RS00070 () | 10437..11369 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
S65EC_RS00075 () | 11356..12759 | - | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
S65EC_RS00080 () | 13003..13983 | + | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
S65EC_RS00085 () | 14211..14528 | + | 318 | WP_001513659.1 | hypothetical protein | - |
S65EC_RS00090 () | 14478..14891 | - | 414 | Protein_15 | IS3 family transposase ISLad1 | Transposase |
S65EC_RS00095 () | 14815..15174 | - | 360 | WP_001513660.1 | hypothetical protein | - |
S65EC_RS00100 () | 15202..15381 | - | 180 | WP_001513661.1 | hypothetical protein | - |
S65EC_RS00105 () | 15386..15766 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
S65EC_RS00110 () | 15766..15987 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
S65EC_RS00115 () | 16170..17726 | + | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
S65EC_RS00120 () | 17723..19006 | + | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
S65EC_RS00125 () | 19128..22244 | + | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
S65EC_RS00130 () | 22458..22870 | + | 413 | Protein_23 | IS1 family transposase | - |
S65EC_RS00135 () | 22947..23203 | + | 257 | Protein_24 | IS3 family transposase ISEc52 | Transposase |
S65EC_RS00140 () | 23216..24367 | - | 1152 | WP_058682604.1 | IS30 family transposase IS30D | Transposase |
S65EC_RS00145 () | 24432..25328 | + | 897 | Protein_26 | IS3 family transposase ISEhe3 | Transposase |
S65EC_RS00150 () | 25430..25711 | + | 282 | WP_000639434.1 | hypothetical protein | - |
S65EC_RS00155 () | 25812..26509 | - | 698 | Protein_28 | IS1 family transposase IS1R | Transposase |
S65EC_RS00160 () | 26619..27944 | + | 1326 | WP_021512928.1 | pyridine nucleotide-disulfide oxidoreductase | - |
S65EC_RS00165 () | 28093..28797 | - | 705 | WP_001505086.1 | IS6-like element IS26 family transposase | - |
S65EC_RS00170 () | 28863..29294 | + | 432 | WP_086732424.1 | hypothetical protein | - |
S65EC_RS00175 () | 29291..30082 | + | 792 | WP_032151908.1 | site-specific integrase | - |
S65EC_RS00180 () | 30220..30495 | - | 276 | WP_000239529.1 | hypothetical protein | - |
S65EC_RS00185 () | 30489..31133 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
S65EC_RS00190 () | 31362..32333 | + | 972 | WP_001103691.1 | hypothetical protein | - |
S65EC_RS00195 () | 32338..32730 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
S65EC_RS00200 () | 32735..34006 | - | 1272 | WP_021563940.1 | Y-family DNA polymerase | - |
S65EC_RS00205 () | 34006..34443 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
S65EC_RS00210 () | 34440..34688 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
S65EC_RS00220 () | 35106..36008 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
S65EC_RS00225 () | 36012..36316 | + | 305 | Protein_41 | hypothetical protein | - |
S65EC_RS00230 () | 36393..37076 | + | 684 | WP_000086185.1 | DNA methylase | - |
S65EC_RS00235 () | 37077..37298 | + | 222 | WP_001104873.1 | hypothetical protein | - |
S65EC_RS00240 () | 37312..37746 | + | 435 | WP_086732423.1 | DUF1380 family protein | - |
S65EC_RS00245 () | 37797..38573 | + | 777 | WP_001753849.1 | hypothetical protein | - |
S65EC_RS00255 () | 39113..39415 | + | 303 | WP_001671341.1 | antirestriction protein | - |
S65EC_RS00260 () | 39462..39884 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
S65EC_RS00265 () | 39881..40072 | + | 192 | WP_001027493.1 | hypothetical protein | - |
S65EC_RS00275 () | 41108..41338 | + | 231 | WP_000218642.1 | hypothetical protein | - |
S65EC_RS00280 () | 41390..42751 | + | 1362 | WP_038999961.1 | DUF3560 domain-containing protein | - |
S65EC_RS00285 () | 42799..43362 | + | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
S65EC_RS00290 () | 43388..43588 | + | 201 | WP_025492130.1 | hypothetical protein | - |
S65EC_RS26965 () | 43751..44086 | + | 336 | WP_014106969.1 | hypothetical protein | - |
S65EC_RS26970 () | 43999..44205 | + | 207 | WP_000275853.1 | hypothetical protein | - |
S65EC_RS00315 () | 44231..44770 | + | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
S65EC_RS00320 () | 44833..45066 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
S65EC_RS00325 () | 45132..47090 | + | 1959 | WP_086732397.1 | ParB/RepB/Spo0J family partition protein | - |
S65EC_RS00330 () | 47145..47579 | + | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
S65EC_RS00335 () | 47576..48295 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
S65EC_RS26810 () | 48307..48495 | - | 189 | WP_001299721.1 | hypothetical protein | - |
- () | 48307..48531 | + | 225 | NuclAT_0 | - | - |
- () | 48307..48531 | + | 225 | NuclAT_0 | - | - |
- () | 48307..48531 | + | 225 | NuclAT_0 | - | - |
- () | 48307..48531 | + | 225 | NuclAT_0 | - | - |
S65EC_RS00340 () | 48575..48733 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
S65EC_RS00360 () | 49655..49942 | + | 288 | WP_000107535.1 | hypothetical protein | - |
S65EC_RS00365 () | 50062..50883 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
S65EC_RS00370 () | 51180..51782 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
S65EC_RS00375 () | 52113..52496 | + | 384 | WP_001151566.1 | relaxosome protein TraM | - |
S65EC_RS00380 () | 52630..53307 | + | 678 | WP_001348626.1 | PAS domain-containing protein | - |
S65EC_RS00385 () | 53395..53622 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
S65EC_RS00390 () | 53656..54018 | + | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
S65EC_RS00395 () | 54023..54334 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
S65EC_RS00400 () | 54356..54922 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
S65EC_RS00405 () | 54933..55637 | + | 705 | WP_165395304.1 | type-F conjugative transfer system secretin TraK | - |
S65EC_RS00410 () | 55637..57088 | + | 1452 | WP_000146647.1 | conjugal transfer protein TraB | - |
S65EC_RS00415 () | 57057..57644 | + | 588 | WP_071587349.1 | conjugal transfer protein TraP | - |
S65EC_RS00420 () | 57583..57942 | + | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
S65EC_RS00425 () | 57942..58457 | + | 516 | WP_001403433.1 | type IV conjugative transfer system lipoprotein TraV | - |
S65EC_RS00430 () | 58592..58813 | + | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
S65EC_RS00435 () | 58973..61600 | + | 2628 | WP_001505126.1 | type IV secretion system protein TraC | - |
S65EC_RS00440 () | 61597..61983 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
S65EC_RS00445 () | 61980..62612 | + | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
S65EC_RS00450 () | 62609..63601 | + | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
S65EC_RS00455 () | 63631..63936 | + | 306 | WP_000224413.1 | hypothetical protein | - |
S65EC_RS00460 () | 63945..64583 | + | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
S65EC_RS00465 () | 64580..66430 | + | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
S65EC_RS00470 () | 66457..66714 | + | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
S65EC_RS00475 () | 66707..67450 | + | 744 | WP_001403429.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
S65EC_RS00480 () | 67466..67804 | + | 339 | WP_086732396.1 | conjugal transfer protein TrbA | - |
S65EC_RS00485 () | 67931..68215 | + | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
S65EC_RS00490 () | 68202..68747 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
S65EC_RS00495 () | 68677..69024 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
S65EC_RS00500 () | 68972..69397 | + | 426 | WP_001348758.1 | F-type conjugal transfer protein TrbF | - |
S65EC_RS00505 () | 69384..70757 | + | 1374 | WP_001403427.1 | conjugal transfer protein TraH | - |
S65EC_RS00510 () | 70754..72655 | + | 1902 | Protein_92 | conjugal transfer mating pair stabilization protein TraG | - |
S65EC_RS00515 () | 72687..73833 | - | 1147 | Protein_93 | IS3 family transposase ISEc52 | Transposase |
S65EC_RS00520 () | 73905..74828 | + | 924 | Protein_94 | conjugal transfer protein TraG | - |
S65EC_RS00525 () | 74844..75329 | + | 486 | WP_086732395.1 | surface exclusion protein | - |
S65EC_RS00530 () | 75378..76109 | + | 732 | WP_001403424.1 | complement resistance protein TraT | - |
S65EC_RS00535 () | 76313..76792 | + | 480 | WP_025861836.1 | hypothetical protein | - |
S65EC_RS00540 () | 77074..78540 | + | 1467 | Protein_98 | type IV conjugative transfer system coupling protein TraD | - |
S65EC_RS00545 () | 78627..79052 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
S65EC_RS00550 () | 79049..79399 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
S65EC_RS00555 () | 79430..81042 | + | 1613 | Protein_101 | IS66 family transposase ISEc23 | Transposase |
S65EC_RS00560 () | 81074..81784 | + | 711 | Protein_102 | type IV secretion system DNA-binding domain-containing protein | - |
S65EC_RS00565 () | 81784..87054 | + | 5271 | WP_096967568.1 | Multifunctional conjugation protein TraI | Relaxase |
S65EC_RS00570 () | 87074..87820 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
S65EC_RS00575 () | 87875..88435 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
S65EC_RS00580 () | 88566..88778 | + | 213 | WP_013023861.1 | hypothetical protein | - |
S65EC_RS26815 () | 89291..89577 | + | 287 | Protein_107 | DUF2726 domain-containing protein | - |
- () | 89544..89595 | - | 52 | NuclAT_1 | - | Antitoxin Detail |
- () | 89544..89595 | - | 52 | NuclAT_1 | - | Antitoxin Detail |
- () | 89544..89595 | - | 52 | NuclAT_1 | - | Antitoxin Detail |
- () | 89544..89595 | - | 52 | NuclAT_1 | - | Antitoxin Detail |
S65EC_RS00595 () | 89641..89775 | + | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
S65EC_RS00600 () | 90072..90326 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
S65EC_RS26975 () | 90432..90566 | + | 135 | Protein_110 | protein CopA/IncA | - |
S65EC_RS00605 () | 90563..90637 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
S65EC_RS00610 () | 90630..91487 | + | 858 | WP_032265352.1 | incFII family plasmid replication initiator RepA | - |
S65EC_RS26820 () | 92191..92331 | + | 141 | WP_165395303.1 | hypothetical protein | - |
S65EC_RS00625 () | 92387..92641 | + | 255 | WP_000108831.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
S65EC_RS00630 () | 92631..92916 | + | 286 | Protein_115 | type II toxin-antitoxin system RelE/ParE family toxin | - |
S65EC_RS00635 () | 93282..93947 | - | 666 | WP_086732345.1 | EAL domain-containing protein | - |
S65EC_RS00640 () | 94090..94803 | - | 714 | WP_086732346.1 | Protein SapB | VF |
S65EC_RS00645 () | 94867..95886 | - | 1020 | WP_077758491.1 | nucleoside hydrolase | - |
S65EC_RS00650 () | 95861..96892 | - | 1032 | WP_000194408.1 | LacI family transcriptional regulator | - |
S65EC_RS00655 () | 96998..98392 | - | 1395 | WP_050488426.1 | MHS family MFS transporter | - |
S65EC_RS00660 () | 98590..98721 | - | 132 | Protein_121 | Rpn family recombination-promoting nuclease/putative transposase | - |
S65EC_RS00665 () | 98995..99375 | + | 381 | WP_000621515.1 | aspartate 1-decarboxylase | - |
S65EC_RS00670 () | 99379..99619 | - | 241 | Protein_123 | polysaccharide deacetylase family protein | - |
S65EC_RS00680 () | 99917..100768 | - | 852 | WP_086732347.1 | pantoate--beta-alanine ligase | - |
S65EC_RS00685 () | 100780..101397 | - | 618 | Protein_125 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
S65EC_RS00690 () | 101399..101611 | + | 213 | Protein_126 | IS3 family transposase ISCfr6 | Transposase |
S65EC_RS00695 () | 101687..102685 | - | 999 | WP_001403395.1 | Arabinose 5-phosphate isomerase KdsD | VF |
S65EC_RS00700 () | 102837..103544 | + | 708 | WP_002431139.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
S65EC_RS00705 () | 103577..104878 | + | 1302 | WP_001403397.1 | four-carbon acid sugar kinase family protein | - |
S65EC_RS00710 () | 104901..105899 | + | 999 | WP_000803224.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
S65EC_RS00715 () | 105938..107488 | + | 1551 | WP_000127288.1 | gluconate permease | - |
S65EC_RS00720 () | 107797..108216 | + | 420 | WP_000435405.1 | IS66 family transposase IS682 | Transposase |
S65EC_RS00730 () | 108265..109316 | - | 1052 | Protein_133 | IS3 family transposase IS629 | Transposase |
S65EC_RS00735 () | 109381..110085 | + | 705 | WP_001505086.1 | IS6 family transposase IS26 | Transposase |
S65EC_RS00740 () | 110143..110673 | - | 531 | Protein_135 | histidine-type phosphatase | - |
S65EC_RS00745 () | 110795..111280 | - | 486 | WP_000874189.1 | hypothetical protein | - |
S65EC_RS00750 () | 111305..111790 | - | 486 | WP_001554949.1 | TlpA family protein disulfide reductase | - |
S65EC_RS00755 () | 111777..112472 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
S65EC_RS00760 () | 112477..113607 | - | 1131 | WP_000729219.1 | ABC transporter permease | - |
S65EC_RS00765 () | 113597..114880 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
S65EC_RS00770 () | 114883..116262 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
S65EC_RS00775 () | 116366..116893 | - | 528 | WP_000178050.1 | iron transporter | - |
S65EC_RS00780 () | 116934..118820 | - | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
S65EC_RS00790 () | 119168..119983 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
S65EC_RS00795 () | 120224..120928 | - | 705 | WP_086732349.1 | IS6 family transposase IS26 | Transposase |
S65EC_RS00800 () | 120991..121170 | - | 180 | Protein_146 | IS21 family transposase ISSso4 | Transposase |
S65EC_RS00805 () | 121187..122710 | - | 1524 | WP_130647888.1 | IS21 family transposase ISSso4 | Transposase |
S65EC_RS00810 () | 122937..123245 | + | 309 | Protein_148 | IS4 family transposase ISEc13 | Transposase |
S65EC_RS00815 () | 123304..124614 | - | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
S65EC_RS00820 () | 124607..125680 | - | 1074 | WP_130647889.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
S65EC_RS00825 () | 125686..126510 | - | 825 | WP_000922702.1 | phosphodiesterase | - |
S65EC_RS00830 () | 126521..127408 | - | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
S65EC_RS00835 () | 127398..128276 | - | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
S65EC_RS00840 () | 128407..128847 | - | 441 | Protein_154 | zinc-binding dehydrogenase | - |
S65EC_RS00850 () | 129248..130138 | + | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
S65EC_RS00855 () | 130163..130543 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
S65EC_RS00860 () | 130576..131541 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
S65EC_RS00865 () | 131587..132339 | - | 753 | WP_001403368.1 | IclR family transcriptional regulator | - |
S65EC_RS00870 () | 132944..133228 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
S65EC_RS00875 () | 133228..133503 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
S65EC_RS00880 () | 133609..133902 | + | 294 | WP_086732350.1 | hypothetical protein | - |
S65EC_RS00885 () | 133937..134065 | - | 129 | Protein_162 | IS481 family transposase | - |
S65EC_RS00890 () | 134098..135267 | - | 1170 | WP_086732351.1 | hypothetical protein | - |
S65EC_RS00900 () | 135760..136067 | + | 308 | Protein_164 | type II toxin-antitoxin system ParD family antitoxin | - |
S65EC_RS00905 () | 136183..136344 | + | 162 | WP_001440647.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
S65EC_RS00910 () | 136411..136593 | + | 183 | WP_042065278.1 | hypothetical protein | - |
S65EC_RS00915 () | 136714..137454 | + | 741 | WP_001066940.1 | tyrosine-type recombinase/integrase | - |
S65EC_RS00920 () | 137777..138766 | - | 990 | WP_024201093.1 | RepB family plasmid replication initiator protein | - |
S65EC_RS00925 () | 139654..139923 | + | 270 | WP_001275013.1 | DUF1778 domain-containing protein | Antitoxin Detail |
S65EC_RS00930 () | 139927..140457 | + | 531 | WP_000348883.1 | GNAT family N-acetyltransferase | Toxin Detail |
S65EC_RS00935 () | 140458..140675 | + | 218 | Protein_171 | transposase | - |
S65EC_RS00940 () | 140680..140955 | - | 276 | WP_001403920.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
S65EC_RS00945 () | 141044..141274 | - | 231 | WP_001261274.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
S65EC_RS00950 () | 141473..144094 | - | 2622 | WP_000283688.1 | histidinol-phosphatase | - |
S65EC_RS00955 () | 144485..144976 | + | 492 | WP_000528930.1 | hypothetical protein | - |
S65EC_RS00960 () | 144988..145746 | + | 759 | WP_032174241.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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