MGE detailed information
MGE type: Prophage MGE length: 40359 bp
Accession: NZ_CP031214 Location: 2258054..2298412 Organism: Escherichia coli strain C600 Replicon: chromosome
Accession: NZ_CP031214 Location: 2258054..2298412 Organism: Escherichia coli strain C600 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK885_RS11560 () | 2253953..2255173 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| DK885_RS11565 () | 2255298..2255993 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| DK885_RS11570 () | 2255946..2257238 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| DK885_RS11575 () | 2257397..2258011 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| DK885_RS11580 () | 2258054..2258908 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| DK885_RS11585 () | 2258910..2259527 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| DK885_RS11590 () | 2259538..2261961 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| DK885_RS11595 () | 2262022..2264448 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| DK885_RS11600 () | 2264647..2264952 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| DK885_RS11605 () | 2265060..2265770 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| DK885_RS11610 () | 2265773..2266333 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| DK885_RS11615 () | 2266368..2266709 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| DK885_RS11620 () | 2266844..2267170 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| DK885_RS11630 () | 2267376..2268590 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DK885_RS11635 () | 2268602..2269621 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| DK885_RS11645 () | 2269809..2270966 | - | 1158 | Protein_2133 | Putative defective protein IntQ ; Integrase | Integrase |
| DK885_RS11650 () | 2270980..2271675 | - | 696 | Protein_2134 | IS3 family transposase IS2 | Transposase |
| DK885_RS11655 () | 2271672..2272439 | - | 768 | Protein_2135 | exonuclease | - |
| DK885_RS11660 () | 2272532..2272723 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| DK885_RS11665 () | 2272720..2272908 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DK885_RS11675 () | 2273476..2273694 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| DK885_RS11685 () | 2273854..2274009 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DK885_RS11690 () | 2274176..2274583 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| DK885_RS11695 () | 2274667..2274897 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| DK885_RS11700 () | 2274881..2275159 | + | 279 | Protein_2142 | hypothetical protein | - |
| DK885_RS23905 () | 2275194..2275343 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| DK885_RS11710 () | 2275780..2276112 | - | 333 | WP_001301033.1 | protein FlxA | - |
| DK885_RS11715 () | 2276315..2276620 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| DK885_RS11720 () | 2276645..2276884 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DK885_RS11725 () | 2276884..2277171 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DK885_RS11730 () | 2277243..2277398 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DK885_RS11735 () | 2277615..2277866 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| DK885_RS11740 () | 2277933..2278211 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| DK885_RS11745 () | 2278213..2279262 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| DK885_RS11750 () | 2279276..2280028 | + | 753 | WP_001047135.1 | antitermination protein | - |
| DK885_RS23910 () | 2280306..2280395 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| DK885_RS11755 () | 2280450..2280662 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DK885_RS11760 () | 2280963..2281178 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DK885_RS24245 () | 2281542..2281712 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| DK885_RS11765 () | 2281932..2282147 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DK885_RS11770 () | 2282152..2282463 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| DK885_RS11775 () | 2282460..2282993 | + | 534 | WP_001092971.1 | lysozyme | - |
| DK885_RS11780 () | 2282990..2283487 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DK885_RS11785 () | 2283850..2284062 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DK885_RS11790 () | 2284073..2284261 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| DK885_RS23915 () | 2284264..2284329 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| DK885_RS11795 () | 2284408..2284563 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| DK885_RS11800 () | 2284735..2284908 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| DK885_RS11805 () | 2285060..2285470 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DK885_RS11810 () | 2285528..2285761 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| DK885_RS11820 () | 2286150..2286719 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| DK885_RS11825 () | 2286670..2287632 | + | 963 | WP_001027733.1 | phage tail protein | - |
| DK885_RS11830 () | 2287632..2288207 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| DK885_RS11835 () | 2288305..2288895 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DK885_RS11840 () | 2289212..2289445 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| DK885_RS23920 () | 2289514..2289627 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DK885_RS11845 () | 2290148..2291515 | + | 1368 | Protein_2174 | MHS family MFS transporter | - |
| DK885_RS11850 () | 2291604..2293064 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| DK885_RS11855 () | 2293099..2293302 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DK885_RS11860 () | 2293479..2294165 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| DK885_RS11865 () | 2294254..2295000 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| DK885_RS11870 () | 2295137..2297182 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| DK885_RS11875 () | 2297226..2297744 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| DK885_RS11880 () | 2298020..2298412 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| DK885_RS11885 () | 2298667..2299557 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| DK885_RS24250 () | 2299672..2299776 | - | 105 | WP_211180496.1 | protein MgtT | - |
| DK885_RS11890 () | 2299776..2299871 | - | 96 | WP_000901367.1 | protein MgtS | - |
| DK885_RS11895 () | 2299998..2301185 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| DK885_RS11900 () | 2301380..2302279 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| DK885_RS11905 () | 2302310..2302528 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| DK885_RS11910 () | 2302560..2302943 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| DK885_RS11915 () | 2302963..2303397 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.005 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |