MGE detailed information
MGE type: Prophage MGE length: 26869 bp
Accession: NZ_CP013952 Location: 4226718..4253586 Organism: Escherichia coli strain HST04 Replicon: chromosome
Accession: NZ_CP013952 Location: 4226718..4253586 Organism: Escherichia coli strain HST04 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AWH44_RS21770 () | 4224093..4226519 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| AWH44_RS21775 () | 4226718..4227023 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| AWH44_RS21780 () | 4227131..4227841 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| AWH44_RS21785 () | 4227844..4228404 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| AWH44_RS21790 () | 4228439..4228780 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| AWH44_RS21795 () | 4228915..4229241 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| AWH44_RS21805 () | 4229447..4230661 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| AWH44_RS21810 () | 4230673..4231692 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| AWH44_RS21815 () | 4231750..4231860 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| AWH44_RS21820 () | 4231880..4233037 | - | 1158 | Protein_3964 | Tyrosine recombinase XerD ; Integrase | Integrase |
| AWH44_RS21825 () | 4233051..4233746 | - | 696 | Protein_3965 | IS3 family transposase IS2 | Transposase |
| AWH44_RS21830 () | 4233743..4234510 | - | 768 | Protein_3966 | exonuclease | - |
| AWH44_RS21835 () | 4234603..4234794 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| AWH44_RS21840 () | 4234791..4234979 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| AWH44_RS21850 () | 4235547..4235765 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| AWH44_RS21860 () | 4235925..4236080 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| AWH44_RS21865 () | 4236247..4236654 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| AWH44_RS21870 () | 4236738..4236968 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| AWH44_RS21875 () | 4236952..4237230 | + | 279 | Protein_3973 | hypothetical protein | - |
| AWH44_RS21880 () | 4237265..4237414 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| AWH44_RS21885 () | 4237851..4238183 | - | 333 | WP_001301033.1 | protein FlxA | - |
| AWH44_RS21890 () | 4238386..4238691 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| AWH44_RS21895 () | 4238716..4238955 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| AWH44_RS21900 () | 4238955..4239242 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| AWH44_RS21905 () | 4239314..4239469 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| AWH44_RS21910 () | 4239686..4239937 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| AWH44_RS21915 () | 4240004..4240282 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| AWH44_RS21920 () | 4240284..4241333 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| AWH44_RS21925 () | 4241347..4242099 | + | 753 | WP_001047135.1 | antitermination protein | - |
| AWH44_RS23940 () | 4242377..4242466 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| AWH44_RS21930 () | 4242521..4242733 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| AWH44_RS21935 () | 4243034..4243249 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| AWH44_RS24340 () | 4243613..4243783 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| AWH44_RS21940 () | 4244003..4244218 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| AWH44_RS21945 () | 4244223..4244534 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| AWH44_RS21950 () | 4244531..4245064 | + | 534 | WP_001092971.1 | lysozyme | - |
| AWH44_RS21955 () | 4245061..4245558 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| AWH44_RS21960 () | 4245921..4246133 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| AWH44_RS21965 () | 4246144..4246332 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| AWH44_RS23945 () | 4246335..4246400 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| AWH44_RS21970 () | 4246479..4246634 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| AWH44_RS21975 () | 4246806..4246979 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| AWH44_RS21980 () | 4247131..4247541 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| AWH44_RS21985 () | 4247599..4247832 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| AWH44_RS21990 () | 4248221..4248790 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| AWH44_RS21995 () | 4248741..4249703 | + | 963 | WP_001027733.1 | phage tail protein | - |
| AWH44_RS22000 () | 4249703..4250278 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| AWH44_RS22005 () | 4250376..4250966 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AWH44_RS22010 () | 4251283..4251516 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| AWH44_RS23950 () | 4251585..4251698 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| AWH44_RS22015 () | 4252219..4253586 | + | 1368 | Protein_4005 | MHS family MFS transporter | - |
| AWH44_RS22020 () | 4253675..4255135 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| AWH44_RS22025 () | 4255170..4255373 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AWH44_RS22030 () | 4255550..4256236 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| AWH44_RS22035 () | 4256325..4257071 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.007 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.006 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.006 |