MGE detailed information
MGE type: Prophage MGE length: 40359 bp
Accession: NZ_CP011124 Location: 3209613..3249971 Organism: Escherichia coli strain USML2 Replicon: chromosome
Accession: NZ_CP011124 Location: 3209613..3249971 Organism: Escherichia coli strain USML2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| USML2_RS16260 () | 3205512..3206732 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| USML2_RS16265 () | 3206857..3207552 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| USML2_RS16270 () | 3207505..3208797 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| USML2_RS16275 () | 3208956..3209570 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| USML2_RS16280 () | 3209613..3210467 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| USML2_RS16285 () | 3210469..3211086 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| USML2_RS16290 () | 3211097..3213520 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| USML2_RS16295 () | 3213581..3216007 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| USML2_RS16300 () | 3216206..3216511 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| USML2_RS16305 () | 3216619..3217329 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| USML2_RS16310 () | 3217332..3217892 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| USML2_RS16315 () | 3217927..3218268 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| USML2_RS16320 () | 3218403..3218729 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| USML2_RS16330 () | 3218935..3220149 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| USML2_RS16335 () | 3220161..3221180 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| USML2_RS16340 () | 3221238..3221348 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| USML2_RS23270 () | 3221368..3222525 | - | 1158 | Protein_2984 | Putative defective protein IntQ ; Integrase | Integrase |
| USML2_RS16350 () | 3222539..3223234 | - | 696 | Protein_2985 | IS3 family transposase IS2 | Transposase |
| USML2_RS16355 () | 3223231..3223998 | - | 768 | Protein_2986 | exonuclease | - |
| USML2_RS16360 () | 3224091..3224282 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| USML2_RS16365 () | 3224279..3224467 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| USML2_RS16375 () | 3225035..3225253 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| USML2_RS16385 () | 3225413..3225568 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| USML2_RS16390 () | 3225735..3226142 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| USML2_RS16395 () | 3226226..3226456 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| USML2_RS16400 () | 3226440..3226718 | + | 279 | Protein_2993 | hypothetical protein | - |
| USML2_RS16405 () | 3226753..3226902 | + | 150 | WP_011443592.1 | hypothetical protein | - |
| USML2_RS16410 () | 3227339..3227671 | - | 333 | WP_001301033.1 | protein FlxA | - |
| USML2_RS16415 () | 3227874..3228179 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| USML2_RS16420 () | 3228204..3228443 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| USML2_RS16425 () | 3228443..3228730 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| USML2_RS16430 () | 3228802..3228957 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| USML2_RS16435 () | 3229174..3229425 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| USML2_RS16440 () | 3229492..3229770 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| USML2_RS16445 () | 3229772..3230821 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| USML2_RS16450 () | 3230835..3231587 | + | 753 | WP_001047135.1 | antitermination protein | - |
| USML2_RS23280 () | 3231865..3231954 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| USML2_RS16455 () | 3232009..3232221 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| USML2_RS16460 () | 3232522..3232737 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| USML2_RS23600 () | 3233101..3233271 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| USML2_RS16465 () | 3233491..3233706 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| USML2_RS16470 () | 3233711..3234022 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| USML2_RS16475 () | 3234019..3234552 | + | 534 | WP_001092971.1 | lysozyme | - |
| USML2_RS16480 () | 3234549..3235046 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| USML2_RS16485 () | 3235409..3235621 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| USML2_RS16490 () | 3235632..3235820 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| USML2_RS23285 () | 3235823..3235888 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| USML2_RS16495 () | 3235967..3236122 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| USML2_RS16500 () | 3236294..3236467 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| USML2_RS16505 () | 3236619..3237029 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| USML2_RS16510 () | 3237087..3237320 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| USML2_RS16515 () | 3237709..3238278 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| USML2_RS16520 () | 3238229..3239191 | + | 963 | WP_001027733.1 | phage tail protein | - |
| USML2_RS16525 () | 3239191..3239766 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| USML2_RS16530 () | 3239864..3240454 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| USML2_RS16535 () | 3240771..3241004 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| USML2_RS23290 () | 3241073..3241186 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| USML2_RS16540 () | 3241707..3243074 | + | 1368 | Protein_3025 | MHS family MFS transporter | - |
| USML2_RS16545 () | 3243163..3244623 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| USML2_RS16550 () | 3244658..3244861 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| USML2_RS16555 () | 3245038..3245724 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| USML2_RS16560 () | 3245813..3246559 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| USML2_RS16570 () | 3246696..3248741 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| USML2_RS16575 () | 3248785..3249303 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| USML2_RS16580 () | 3249579..3249971 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| USML2_RS16585 () | 3250226..3251116 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| USML2_RS23605 () | 3251231..3251335 | - | 105 | WP_211180496.1 | protein MgtT | - |
| USML2_RS16590 () | 3251335..3251430 | - | 96 | WP_000901367.1 | protein MgtS | - |
| USML2_RS16595 () | 3251557..3252744 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| USML2_RS16600 () | 3252939..3253838 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| USML2_RS16605 () | 3253869..3254087 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| USML2_RS16610 () | 3254119..3254502 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| USML2_RS16615 () | 3254522..3254956 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.005 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |