MGE detailed information
MGE type: Prophage MGE length: 28205 bp
Accession: NZ_CP011113 Location: 1593305..1621509 Organism: Escherichia coli strain RR1 Replicon: chromosome
Accession: NZ_CP011113 Location: 1593305..1621509 Organism: Escherichia coli strain RR1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SR35_RS08455 () | 1589820..1590566 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SR35_RS08460 () | 1590655..1591341 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SR35_RS08465 () | 1591518..1591721 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SR35_RS08470 () | 1591756..1593216 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SR35_RS08475 () | 1593305..1594672 | - | 1368 | Protein_1501 | MHS family MFS transporter | - |
| SR35_RS24850 () | 1595193..1595306 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SR35_RS08480 () | 1595375..1595608 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| SR35_RS08485 () | 1595925..1596515 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SR35_RS08490 () | 1596613..1597188 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SR35_RS08495 () | 1597188..1598150 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SR35_RS08500 () | 1598101..1598670 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SR35_RS08505 () | 1599059..1599292 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SR35_RS08510 () | 1599350..1599760 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SR35_RS08515 () | 1599912..1600085 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SR35_RS08520 () | 1600257..1600412 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SR35_RS24855 () | 1600491..1600556 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SR35_RS08525 () | 1600559..1600747 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SR35_RS08530 () | 1600758..1600970 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SR35_RS08535 () | 1601333..1601830 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SR35_RS08540 () | 1601827..1602360 | - | 534 | WP_001092971.1 | lysozyme | - |
| SR35_RS08545 () | 1602357..1602668 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SR35_RS08550 () | 1602673..1602888 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SR35_RS25270 () | 1603108..1603278 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| SR35_RS08555 () | 1603642..1603857 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SR35_RS08560 () | 1604158..1604370 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SR35_RS24860 () | 1604425..1604514 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SR35_RS08565 () | 1604792..1605544 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SR35_RS08570 () | 1605558..1606607 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SR35_RS08575 () | 1606609..1606887 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SR35_RS08580 () | 1606954..1607205 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SR35_RS08585 () | 1607422..1607577 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SR35_RS08590 () | 1607649..1607936 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SR35_RS08595 () | 1607936..1608175 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SR35_RS08600 () | 1608200..1608505 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SR35_RS08610 () | 1608708..1609040 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SR35_RS08615 () | 1609477..1609626 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SR35_RS08620 () | 1609661..1609939 | - | 279 | Protein_1533 | hypothetical protein | - |
| SR35_RS08625 () | 1609923..1610153 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SR35_RS08630 () | 1610237..1610644 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SR35_RS08635 () | 1610811..1610966 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SR35_RS08645 () | 1611126..1611344 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SR35_RS08655 () | 1611912..1612100 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SR35_RS08660 () | 1612097..1612288 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| SR35_RS08665 () | 1612381..1613148 | + | 768 | Protein_1540 | exonuclease | - |
| SR35_RS08670 () | 1613145..1613840 | + | 696 | Protein_1541 | IS3 family transposase IS2 | Transposase |
| SR35_RS24870 () | 1613854..1615011 | + | 1158 | Protein_1542 | Tyrosine recombinase XerD ; Integrase | Integrase |
| SR35_RS08680 () | 1615031..1615141 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SR35_RS08685 () | 1615199..1616218 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SR35_RS08690 () | 1616230..1617444 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SR35_RS08700 () | 1617650..1617976 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SR35_RS08715 () | 1618273..1619501 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| SR35_RS08720 () | 1619513..1619788 | + | 276 | Protein_1548 | DUF1283 family protein | - |
| SR35_RS08725 () | 1619823..1620383 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SR35_RS08730 () | 1620386..1621096 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SR35_RS08735 () | 1621204..1621509 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| SR35_RS08740 () | 1621708..1624134 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.006 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.007 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.007 |