MGE detailed information
MGE type: Prophage MGE length: 25743 bp
Accession: NZ_CP010439 Location: 2371482..2397224 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010439 Location: 2371482..2397224 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH02_RS11730 () | 2367997..2368743 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| SH02_RS11735 () | 2368832..2369518 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| SH02_RS11740 () | 2369695..2369898 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| SH02_RS11745 () | 2369933..2371393 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| SH02_RS11750 () | 2371482..2372849 | - | 1368 | Protein_2210 | MHS family MFS transporter | - |
| SH02_RS25670 () | 2373370..2373483 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| SH02_RS11755 () | 2373552..2373785 | + | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| SH02_RS11760 () | 2374102..2374692 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| SH02_RS11765 () | 2374790..2375365 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| SH02_RS11770 () | 2375365..2376327 | - | 963 | WP_001027733.1 | phage tail protein | - |
| SH02_RS11775 () | 2376278..2376847 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| SH02_RS11780 () | 2377236..2377469 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| SH02_RS11785 () | 2377527..2377937 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| SH02_RS11790 () | 2378089..2378262 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| SH02_RS11795 () | 2378434..2378589 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| SH02_RS25675 () | 2378668..2378733 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| SH02_RS24105 () | 2378736..2378924 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| SH02_RS11800 () | 2378935..2379147 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| SH02_RS11805 () | 2379510..2380007 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| SH02_RS11810 () | 2380004..2380537 | - | 534 | WP_001092971.1 | lysozyme | - |
| SH02_RS11815 () | 2380534..2380845 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| SH02_RS11820 () | 2380850..2381065 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| SH02_RS11825 () | 2381819..2382034 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| SH02_RS11830 () | 2382335..2382547 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| SH02_RS25680 () | 2382602..2382691 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| SH02_RS11835 () | 2382969..2383721 | - | 753 | WP_001047135.1 | antitermination protein | - |
| SH02_RS11840 () | 2383735..2384784 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| SH02_RS11845 () | 2384786..2385064 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| SH02_RS11850 () | 2385131..2385382 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| SH02_RS11855 () | 2385599..2385754 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| SH02_RS11860 () | 2385826..2386113 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| SH02_RS11865 () | 2386113..2386352 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| SH02_RS24110 () | 2386377..2386682 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| SH02_RS11870 () | 2386885..2387217 | + | 333 | WP_001301033.1 | protein FlxA | - |
| SH02_RS23030 () | 2387654..2387803 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| SH02_RS11875 () | 2387838..2388116 | - | 279 | Protein_2241 | hypothetical protein | - |
| SH02_RS11880 () | 2388100..2388330 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| SH02_RS11885 () | 2388414..2388821 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| SH02_RS11890 () | 2388988..2389143 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| SH02_RS11895 () | 2389303..2389521 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| SH02_RS11905 () | 2390089..2390277 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| SH02_RS11910 () | 2390274..2390465 | + | 192 | WP_038432577.1 | lysis protein YdfD | - |
| SH02_RS24125 () | 2390558..2391325 | + | 768 | Protein_2248 | exonuclease | - |
| SH02_RS11920 () | 2391322..2392017 | + | 696 | Protein_2249 | IS3 family transposase IS2 | Transposase |
| SH02_RS25690 () | 2392031..2393188 | + | 1158 | Protein_2250 | Putative defective protein IntQ ; Integrase | Integrase |
| SH02_RS25180 () | 2393208..2393318 | - | 111 | WP_001360138.1 | hypothetical protein | - |
| SH02_RS11930 () | 2393376..2394395 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| SH02_RS11935 () | 2394407..2395621 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| SH02_RS11940 () | 2395827..2396153 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| SH02_RS11945 () | 2396288..2396629 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| SH02_RS11950 () | 2396664..2397224 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| SH02_RS11955 () | 2397227..2397937 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| SH02_RS11960 () | 2398045..2398350 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| SH02_RS11965 () | 2398549..2400975 | + | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.008 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.008 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.008 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.008 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.008 |