MGE detailed information
MGE type: Genomic_island MGE length: 11570 bp
Accession: NZ_CP010140 Location: 4023226..4034795 Organism: Escherichia coli strain D3 Replicon: chromosome
Accession: NZ_CP010140 Location: 4023226..4034795 Organism: Escherichia coli strain D3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG36_RS21200 () | 4019551..4020759 | - | 1209 | WP_001352528.1 | propionate kinase | - |
| RG36_RS21205 () | 4020785..4022116 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| RG36_RS21210 () | 4022138..4023127 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| RG36_RS21215 () | 4023226..4024164 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| RG36_RS29665 () | 4024479..4024697 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| RG36_RS21225 () | 4024953..4025492 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| RG36_RS29000 () | 4025514..4026617 | + | 1104 | Protein_3829 | YhaC family protein | - |
| RG36_RS21250 () | 4027619..4028764 | - | 1146 | WP_069354218.1 | glycerate 2-kinase | - |
| RG36_RS21255 () | 4028861..4029751 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| RG36_RS21260 () | 4029781..4030551 | - | 771 | WP_001058214.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| RG36_RS21265 () | 4030567..4031901 | - | 1335 | WP_000599653.1 | galactarate/glucarate/glycerate transporter GarP | - |
| RG36_RS21270 () | 4032276..4033847 | + | 1572 | WP_001273761.1 | galactarate dehydratase | - |
| RG36_RS21275 () | 4033996..4034331 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| RG36_RS21280 () | 4034331..4034795 | + | 465 | WP_000347251.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| RG36_RS21285 () | 4034850..4035659 | - | 810 | WP_000072192.1 | aga operon transcriptional regulator AgaR | - |
| RG36_RS21295 () | 4035908..4037188 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| RG36_RS21300 () | 4037211..4037684 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| RG36_RS21305 () | 4037695..4038474 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| RG36_RS21310 () | 4038464..4039342 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| RG36_RS21315 () | 4039360..4039794 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.009 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.009 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.009 |