MGE detailed information
MGE type: Genomic_island MGE length: 11570 bp
Accession: NZ_CP010125 Location: 3934526..3946095 Organism: Escherichia coli strain C8 Replicon: chromosome
Accession: NZ_CP010125 Location: 3934526..3946095 Organism: Escherichia coli strain C8 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG30_RS20280 () | 3930851..3932059 | - | 1209 | WP_053273580.1 | propionate kinase | - |
| RG30_RS20285 () | 3932085..3933416 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| RG30_RS20290 () | 3933438..3934427 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| RG30_RS20295 () | 3934526..3935464 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| RG30_RS27900 () | 3935779..3935997 | + | 219 | WP_001390702.1 | transcriptional activator TdcR | - |
| RG30_RS20305 () | 3936253..3936792 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| RG30_RS20310 () | 3936814..3937917 | + | 1104 | WP_001488354.1 | YhaC family protein | - |
| RG30_RS20325 () | 3938919..3940064 | - | 1146 | WP_001301934.1 | glycerate 2-kinase | - |
| RG30_RS20330 () | 3940161..3941051 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| RG30_RS20335 () | 3941081..3941851 | - | 771 | WP_073534044.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| RG30_RS20340 () | 3941867..3943201 | - | 1335 | WP_000599651.1 | galactarate/glucarate/glycerate transporter GarP | - |
| RG30_RS20345 () | 3943576..3945147 | + | 1572 | WP_001273761.1 | galactarate dehydratase | - |
| RG30_RS20350 () | 3945296..3945631 | + | 336 | WP_001308975.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| RG30_RS20355 () | 3945631..3946095 | + | 465 | WP_000347251.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| RG30_RS20360 () | 3946150..3946959 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| RG30_RS20370 () | 3947208..3948488 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| RG30_RS20375 () | 3948511..3948984 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| RG30_RS20380 () | 3948995..3949774 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| RG30_RS20385 () | 3949764..3950642 | + | 879 | WP_073534046.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| RG30_RS20390 () | 3950660..3951094 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.009 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.009 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.009 |