MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP006636 Location: 3222388..3232335 Organism: Escherichia coli PCN061 Replicon: chromosome
Accession: NZ_CP006636 Location: 3222388..3232335 Organism: Escherichia coli PCN061 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCN061_RS16220 () | 3218221..3219552 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| PCN061_RS16225 () | 3219574..3220563 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| PCN061_RS16230 () | 3220662..3221600 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| PCN061_RS29545 () | 3221914..3222132 | + | 219 | WP_211899874.1 | transcriptional activator TdcR | - |
| PCN061_RS28995 () | 3222388..3222630 | + | 243 | WP_123009844.1 | hypothetical protein | - |
| PCN061_RS29000 () | 3222640..3222926 | + | 287 | Protein_3058 | hypothetical protein | - |
| PCN061_RS16245 () | 3222948..3224136 | + | 1189 | Protein_3059 | YhaC family protein | - |
| PCN061_RS16250 () | 3225159..3226304 | - | 1146 | WP_032298172.1 | glycerate 2-kinase | - |
| PCN061_RS16255 () | 3226401..3227291 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| PCN061_RS16260 () | 3227321..3228091 | - | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| PCN061_RS16265 () | 3228107..3229441 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| PCN061_RS16270 () | 3229816..3231387 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| PCN061_RS16275 () | 3231536..3231871 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| PCN061_RS16280 () | 3231871..3232335 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| PCN061_RS16285 () | 3232390..3233199 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| PCN061_RS16290 () | 3233448..3234728 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| PCN061_RS16295 () | 3234751..3235224 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| PCN061_RS16300 () | 3235235..3236014 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| PCN061_RS16305 () | 3236004..3236882 | + | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| PCN061_RS16310 () | 3236900..3237334 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.01 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.01 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.01 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.01 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |