MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_AP019675 Location: 605461..617135 Organism: Escherichia coli strain GSH8M-2 Replicon: chromosome
Accession: NZ_AP019675 Location: 605461..617135 Organism: Escherichia coli strain GSH8M-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GDK32_RS02890 () | 600462..600896 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| GDK32_RS02895 () | 600914..601792 | - | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| GDK32_RS02900 () | 601782..602561 | - | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| GDK32_RS02905 () | 602572..603045 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| GDK32_RS02910 () | 603068..604348 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| GDK32_RS02915 () | 604597..605406 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| GDK32_RS02920 () | 605461..605925 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| GDK32_RS02925 () | 605925..606260 | - | 336 | WP_021547164.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| GDK32_RS02930 () | 606409..607980 | - | 1572 | WP_001753084.1 | galactarate dehydratase | - |
| GDK32_RS02935 () | 608355..609689 | + | 1335 | WP_152071808.1 | galactarate/glucarate/glycerate transporter GarP | - |
| GDK32_RS02940 () | 609705..610475 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| GDK32_RS02945 () | 610505..611395 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| GDK32_RS02950 () | 611492..612637 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| GDK32_RS02960 () | 613660..614847 | - | 1188 | WP_021547163.1 | YhaC family protein | - |
| GDK32_RS02965 () | 614869..615408 | - | 540 | WP_000675733.1 | hypothetical protein | - |
| GDK32_RS02970 () | 615664..616008 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| GDK32_RS02975 () | 616197..617135 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| GDK32_RS02980 () | 617234..618223 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| GDK32_RS02985 () | 618245..619576 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| GDK32_RS02990 () | 619602..620810 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |