MGE detailed information
MGE type: Prophage MGE length: 53653 bp
Accession: NC_002947 Location: 4377646..4431298 Organism: Pseudomonas putida KT2440 Replicon: chromosome
Accession: NC_002947 Location: 4377646..4431298 Organism: Pseudomonas putida KT2440 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP_RS20025 (PP_3849) | 4372987..4374957 | + | 1971 | WP_061405675.1 | calcium-binding protein | - |
| PP_RS20030 (PP_3850) | 4375036..4375281 | - | 246 | WP_049587960.1 | hypothetical protein | - |
| PP_RS20040 (PP_3851) | 4375645..4375869 | - | 225 | WP_049587957.1 | hypothetical protein | - |
| PP_RS20045 (PP_3852) | 4376084..4377571 | - | 1488 | WP_061405677.1 | glycoside hydrolase | - |
| PP_RS20050 (PP_5638) | 4377646..4378176 | - | 531 | WP_049587950.1 | DUF2514 domain-containing protein | - |
| PP_RS20055 (PP_3854) | 4378173..4378712 | - | 540 | WP_010954681.1 | glycoside hydrolase family 104 protein | - |
| PP_RS20060 (PP_5639) | 4378801..4379169 | + | 369 | WP_061405678.1 | YceK/YidQ family lipoprotein | - |
| PP_RS20065 (PP_3855) | 4379114..4379338 | - | 225 | WP_010954682.1 | hypothetical protein | - |
| PP_RS20070 (PP_3856) | 4379761..4380525 | - | 765 | WP_010954683.1 | hypothetical protein | - |
| PP_RS20075 (PP_3857) | 4380537..4382789 | - | 2253 | WP_010954684.1 | hypothetical protein | - |
| PP_RS20080 | 4382857..4383048 | - | 192 | WP_049587948.1 | hypothetical protein | - |
| PP_RS20085 (PP_3858) | 4383051..4383854 | - | 804 | WP_010954685.1 | tail protein | - |
| PP_RS20090 (PP_3859) | 4383857..4384501 | - | 645 | WP_010954686.1 | YmfQ family protein | - |
| PP_RS20095 (PP_3860) | 4384492..4385523 | - | 1032 | WP_110771850.1 | baseplate J/gp47 family protein | - |
| PP_RS20100 (PP_3861) | 4385525..4385911 | - | 387 | WP_010954688.1 | phage GP46 family protein | - |
| PP_RS20105 (PP_3862) | 4385908..4386408 | - | 501 | WP_010954689.1 | phage baseplate assembly protein V | - |
| PP_RS20110 (PP_3863) | 4386417..4387526 | - | 1110 | WP_010954690.1 | hypothetical protein | - |
| PP_RS20115 (PP_3864) | 4387530..4388792 | - | 1263 | WP_010954691.1 | DNA circularization N-terminal domain-containing protein | - |
| PP_RS20120 (PP_3865) | 4388785..4390740 | - | 1956 | WP_010954692.1 | phage tail tape measure protein | - |
| PP_RS20125 (PP_5640) | 4390733..4390924 | - | 192 | WP_061405679.1 | hypothetical protein | - |
| PP_RS20130 (PP_3866) | 4390870..4391166 | - | 297 | WP_049587943.1 | phage tail assembly protein | - |
| PP_RS20135 (PP_3867) | 4391163..4391510 | - | 348 | WP_049587942.1 | phage tail tube protein | - |
| PP_RS20140 (PP_3868) | 4391593..4393014 | - | 1422 | WP_010951893.1 | group II intron reverse transcriptase/maturase | - |
| PP_RS20145 (PP_3869) | 4393484..4394971 | - | 1488 | WP_010954695.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PP_RS20150 (PP_3870) | 4394971..4395174 | - | 204 | WP_010954696.1 | DUF2635 domain-containing protein | - |
| PP_RS20155 (PP_3871) | 4395180..4395773 | - | 594 | WP_049587778.1 | hypothetical protein | - |
| PP_RS20160 (PP_3873) | 4395803..4396288 | - | 486 | WP_110771836.1 | hypothetical protein | - |
| PP_RS20165 (PP_3874) | 4396311..4396685 | - | 375 | WP_010954700.1 | head-tail adaptor protein | - |
| PP_RS20170 (PP_3875) | 4396688..4397203 | - | 516 | WP_172835030.1 | hypothetical protein | - |
| PP_RS20175 (PP_3876) | 4397242..4397490 | - | 249 | WP_110771832.1 | hypothetical protein | - |
| PP_RS20180 (PP_3877) | 4397543..4398856 | - | 1314 | WP_049587776.1 | phage major capsid protein | - |
| PP_RS20185 (PP_3878) | 4398918..4399889 | - | 972 | WP_010954704.1 | S49 family peptidase | - |
| PP_RS20190 (PP_3879) | 4399886..4401157 | - | 1272 | WP_010954705.1 | phage portal protein | - |
| PP_RS20195 (PP_3880) | 4401160..4401348 | - | 189 | WP_010954706.1 | hypothetical protein | - |
| PP_RS20200 (PP_3881) | 4401345..4402982 | - | 1638 | WP_110771829.1 | terminase large subunit | - |
| PP_RS20205 (PP_3882) | 4403113..4403460 | - | 348 | WP_197686813.1 | phage terminase small subunit P27 family | - |
| PP_RS20210 (PP_3883) | 4403716..4404036 | - | 321 | WP_010954709.1 | HNH endonuclease | - |
| PP_RS20215 (PP_3884) | 4404040..4404363 | - | 324 | WP_010954710.1 | phage holin, lambda family | - |
| PP_RS20220 (PP_5641) | 4404522..4405151 | + | 630 | WP_061405680.1 | hypothetical protein | - |
| PP_RS20225 (PP_3886) | 4405300..4405560 | - | 261 | WP_010954712.1 | hypothetical protein | - |
| PP_RS20230 (PP_3887) | 4405544..4406215 | - | 672 | WP_010954713.1 | hypothetical protein | - |
| PP_RS20235 (PP_3888) | 4406228..4406548 | - | 321 | WP_010954714.1 | hypothetical protein | - |
| PP_RS20240 (PP_3889) | 4406545..4407843 | - | 1299 | WP_010954715.1 | hypothetical protein ; Integrase | Integrase |
| PP_RS20245 (PP_3890) | 4407840..4408268 | - | 429 | WP_049587773.1 | VRR-NUC domain-containing protein | - |
| PP_RS20250 | 4408265..4408435 | - | 171 | WP_154070660.1 | hypothetical protein | - |
| PP_RS20255 (PP_3891) | 4408432..4408728 | - | 297 | WP_010954717.1 | DUF1364 domain-containing protein | - |
| PP_RS20260 (PP_3892) | 4408710..4408916 | - | 207 | WP_010954718.1 | hypothetical protein | - |
| PP_RS20265 (PP_3893) | 4408916..4410313 | - | 1398 | WP_010954719.1 | AAA family ATPase | - |
| PP_RS20270 (PP_3894) | 4410310..4411140 | - | 831 | WP_010954720.1 | replication protein | - |
| PP_RS20275 (PP_3895) | 4411465..4411677 | - | 213 | WP_010954721.1 | helix-turn-helix domain-containing protein | - |
| PP_RS20280 (PP_3896) | 4411765..4412412 | + | 648 | WP_010954722.1 | helix-turn-helix transcriptional regulator | - |
| PP_RS20285 (PP_3897) | 4412470..4412883 | + | 414 | WP_010954723.1 | HIRAN domain-containing protein | - |
| PP_RS20290 (PP_3898) | 4412927..4413163 | + | 237 | WP_010954724.1 | hypothetical protein | - |
| PP_RS20295 (PP_5643) | 4413330..4414322 | + | 993 | WP_049587768.1 | hypothetical protein | - |
| PP_RS20300 (PP_5644) | 4414325..4414891 | + | 567 | WP_049587766.1 | hypothetical protein | - |
| PP_RS20305 (PP_3899) | 4415059..4415400 | - | 342 | WP_049587764.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PP_RS20310 (PP_3900) | 4415400..4415648 | - | 249 | WP_010954726.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PP_RS20315 (PP_3901) | 4415798..4416058 | + | 261 | WP_010954727.1 | DUF1654 domain-containing protein | - |
| PP_RS20320 (PP_3903) | 4416430..4416639 | + | 210 | WP_049587762.1 | hypothetical protein | - |
| PP_RS20325 (PP_3905) | 4417276..4417659 | + | 384 | WP_049587761.1 | helix-turn-helix transcriptional regulator | - |
| PP_RS20330 (PP_3906) | 4417679..4417948 | + | 270 | WP_010954732.1 | hypothetical protein | - |
| PP_RS20335 (PP_3907) | 4417945..4418403 | + | 459 | WP_010954733.1 | hypothetical protein | - |
| PP_RS20340 (PP_3908) | 4418485..4418835 | + | 351 | WP_010954734.1 | hypothetical protein | - |
| PP_RS20345 (PP_3909) | 4418849..4419127 | - | 279 | WP_010954735.1 | hypothetical protein | - |
| PP_RS20350 (PP_3910) | 4419234..4419785 | + | 552 | WP_049587760.1 | hypothetical protein | - |
| PP_RS20355 (PP_3911) | 4419800..4420183 | + | 384 | WP_010954737.1 | hypothetical protein | - |
| PP_RS20360 (PP_3912) | 4420251..4421912 | + | 1662 | WP_010954738.1 | DNA cytosine methyltransferase | - |
| PP_RS20365 (PP_3913) | 4421921..4422598 | + | 678 | WP_049587756.1 | hypothetical protein | - |
| PP_RS20370 (PP_5645) | 4422648..4422947 | - | 300 | WP_049587754.1 | hypothetical protein | - |
| PP_RS20375 (PP_3914) | 4423113..4423496 | + | 384 | WP_010954740.1 | hypothetical protein | - |
| PP_RS20380 (PP_3915) | 4423768..4424091 | + | 324 | WP_010954741.1 | hypothetical protein | - |
| PP_RS20385 (PP_3916) | 4424088..4424480 | + | 393 | WP_010954742.1 | DUF2591 domain-containing protein | - |
| PP_RS20390 (PP_3917) | 4425763..4426080 | + | 318 | WP_049587747.1 | hypothetical protein | - |
| PP_RS20395 (PP_3919) | 4426120..4426365 | + | 246 | WP_010954745.1 | DUF4224 domain-containing protein | - |
| PP_RS20400 (PP_3920) | 4426367..4427416 | + | 1050 | WP_010954746.1 | hypothetical protein ; Integrase | Integrase |
| PP_RS20410 (PP_3922) | 4427746..4428765 | - | 1020 | WP_010954747.1 | protease SohB | - |
| PP_RS20415 (PP_3923) | 4428963..4429673 | + | 711 | WP_010954748.1 | histidine phosphatase family protein | - |
| PP_RS20420 (PP_3924) | 4429730..4430047 | + | 318 | WP_003251077.1 | SCP2 sterol-binding domain-containing protein | - |
| PP_RS20425 (PP_3925) | 4430231..4431298 | + | 1068 | WP_010954749.1 | phosphotransferase family protein | - |
| PP_RS20430 (PP_3926) | 4431335..4432102 | + | 768 | WP_003251082.1 | SDR family oxidoreductase | - |
| PP_RS20435 (PP_3927) | 4432103..4432924 | - | 822 | WP_003251085.1 | class I SAM-dependent methyltransferase | - |
| PP_RS20440 (PP_5648) | 4433094..4433444 | - | 351 | WP_012051882.1 | hypothetical protein | - |
| PP_RS20445 (PP_3928) | 4433562..4433852 | + | 291 | WP_010954750.1 | RcnB family protein | - |
| PP_RS20450 (PP_3929) | 4434096..4434281 | + | 186 | WP_004577263.1 | hypothetical protein | - |
| PP_RS20455 (PP_3930) | 4434355..4434747 | + | 393 | WP_010954752.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA20007 | AE015451 | 4377646..4431298 | 0 | |
| Pseudomonas putida KT2440 | Prophage | TA20007 | AE015451 | 4377646..4431298 | 0 | |
| Pseudomonas putida strain PP1 | Prophage | TA119874 | NZ_CP036494 | 1754427..1816813 | 0.004 | |
| Pseudomonas putida strain A0_F0_I1 | Prophage | TA159236 | NZ_CP054264 | 4377690..4440076 | 0.004 | |
| Pseudomonas putida strain KT2440 isolate pnCas9-BEC6-C | Prophage | TA245527 | NZ_CP097527 | 4377657..4431309 | 0 | |
| Pseudomonas putida strain KT2440 isolate pMBEC6 | Prophage | TA245536 | NZ_CP097528 | 4377660..4431312 | 0 | |
| Pseudomonas putida strain KT2440 isolate pSEVA631 | Prophage | TA245545 | NZ_CP097529 | 4377506..4431158 | 0 |