MGE detailed information
MGE type: Prophage MGE length: 53653 bp
Accession: AE015451 Location: 4377646..4431298 Organism: Pseudomonas putida KT2440 Replicon: chromosome
Accession: AE015451 Location: 4377646..4431298 Organism: Pseudomonas putida KT2440 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP_3849 | 4372987..4374957 | + | 1971 | AAN69443.2 | putative calcium-binding protein, hemolysin-type | - |
| PP_3850 | 4375036..4375299 | - | 264 | AAN69444.1 | conserved protein of unknown function | - |
| PP_5637 | 4375278..4375535 | - | 258 | AMM02973.1 | conserved protein of unknown function | - |
| PP_3851 | 4375645..4375968 | - | 324 | AAN69445.1 | conserved protein of unknown function | - |
| PP_3852 | 4376084..4377571 | - | 1488 | AAN69446.2 | conserved protein of unknown function with BNR domain | - |
| PP_5638 | 4377646..4378176 | - | 531 | AMM02974.1 | conserved protein of unknown function | - |
| PP_3854 | 4378173..4378712 | - | 540 | AAN69448.1 | Lysozyme | - |
| PP_5639 | 4378801..4379169 | + | 369 | AMM02975.1 | conserved exported protein of unknown function | - |
| PP_3855 | 4379114..4379338 | - | 225 | AAN69449.1 | conserved protein of unknown function | - |
| PP_3856 | 4379761..4380525 | - | 765 | AAN69450.1 | conserved protein of unknown function | - |
| PP_3857 | 4380537..4382789 | - | 2253 | AAN69451.1 | conserved protein of unknown function | - |
| PP_3858 | 4383051..4383854 | - | 804 | AAN69452.1 | putative Tail fiber protein | - |
| PP_3859 | 4383857..4384501 | - | 645 | AAN69453.1 | conserved protein of unknown function | - |
| PP_3860 | 4384492..4385535 | - | 1044 | AAN69454.1 | Phage FluMu protein gp47 | - |
| PP_3861 | 4385525..4385911 | - | 387 | AAN69455.1 | Phage FluMu protein gp46 | - |
| PP_3862 | 4385908..4386408 | - | 501 | AAN69456.1 | putative Phage assembly protein | - |
| PP_3863 | 4386417..4387526 | - | 1110 | AAN69457.1 | putative Phage tail protein | - |
| PP_3864 | 4387530..4388792 | - | 1263 | AAN69458.1 | putative Phage FluMu DNA circulation protein | - |
| PP_3865 | 4388785..4390740 | - | 1956 | AAN69459.1 | putative Phage tail protein | - |
| PP_5640 | 4390733..4390924 | - | 192 | AMM02976.1 | conserved protein of unknown function | - |
| PP_3866 | 4390870..4391166 | - | 297 | AAN69460.2 | conserved protein of unknown function | - |
| PP_3867 | 4391163..4391516 | - | 354 | AAN69461.1 | putative Phage tail tube protein | - |
| PP_3868 | 4391593..4393014 | - | 1422 | AAN69462.1 | Group II intron-encoding maturase | - |
| PP_3869 | 4393484..4394971 | - | 1488 | AAN69463.1 | putative Phage sheath protein | - |
| PP_3870 | 4394971..4395174 | - | 204 | AAN69464.1 | Phage FluMu protein gp38 | - |
| PP_3871 | 4395180..4395773 | - | 594 | AAN69465.2 | conserved protein of unknown function | - |
| PP_3873 | 4395803..4396318 | - | 516 | AAN69467.1 | conserved protein of unknown function | - |
| PP_3874 | 4396311..4396685 | - | 375 | AAN69468.1 | conserved protein of unknown function | - |
| PP_3875 | 4396688..4397239 | - | 552 | AAN69469.1 | conserved protein of unknown function | - |
| PP_3876 | 4397242..4397568 | - | 327 | AAN69470.1 | conserved protein of unknown function | - |
| PP_3877 | 4397543..4398856 | - | 1314 | AAN69471.2 | conserved protein of unknown function | - |
| PP_3878 | 4398918..4399889 | - | 972 | AAN69472.1 | putative Phage minor capsid protein C | - |
| PP_3879 | 4399886..4401157 | - | 1272 | AAN69473.1 | Phage portal protein, HK97 family | - |
| PP_3880 | 4401160..4401348 | - | 189 | AAN69474.1 | conserved exported protein of unknown function | - |
| PP_3881 | 4401345..4403153 | - | 1809 | AAN69475.1 | putative Phage terminase, large subunit | - |
| PP_3882 | 4403113..4403580 | - | 468 | AAN69476.1 | putative Phage terminase, small subunit | - |
| PP_3883 | 4403716..4404036 | - | 321 | AAN69477.1 | putative Phage holin | - |
| PP_3884 | 4404040..4404363 | - | 324 | AAN69478.1 | Phage holin, lambda family | - |
| PP_5641 | 4404522..4405151 | + | 630 | AMM02977.1 | conserved protein of unknown function | - |
| PP_3886 | 4405300..4405560 | - | 261 | AAN69480.1 | conserved protein of unknown function | - |
| PP_3887 | 4405544..4406215 | - | 672 | AAN69481.1 | conserved protein of unknown function | - |
| PP_3888 | 4406228..4406548 | - | 321 | AAN69482.1 | conserved protein of unknown function | - |
| PP_3889 | 4406545..4407843 | - | 1299 | AAN69483.1 | hypothetical protein ; Integrase | Integrase |
| PP_3890 | 4407840..4408283 | - | 444 | AAN69484.1 | conserved protein of unknown function | - |
| PP_3891 | 4408432..4408728 | - | 297 | AAN69485.1 | conserved protein of unknown function | - |
| PP_3892 | 4408710..4408916 | - | 207 | AAN69486.1 | conserved protein of unknown function | - |
| PP_3893 | 4408916..4410313 | - | 1398 | AAN69487.1 | putative Phage DNA helicase | - |
| PP_3894 | 4410310..4411140 | - | 831 | AAN69488.1 | putative Phage replication protein O | - |
| PP_3895 | 4411465..4411677 | - | 213 | AAN69489.1 | putative Regulatory protein Cro | - |
| PP_3896 | 4411765..4412412 | + | 648 | AAN69490.1 | Transcriptional regulator, Cro/CI family | - |
| PP_3897 | 4412470..4412883 | + | 414 | AAN69491.1 | conserved protein of unknown function | - |
| PP_3898 | 4412927..4413163 | + | 237 | AAN69492.1 | conserved protein of unknown function | - |
| PP_5643 | 4413330..4414322 | + | 993 | AMM02978.1 | conserved protein of unknown function | - |
| PP_5644 | 4414325..4414891 | + | 567 | AMM02979.1 | conserved membrane protein of unknown function | - |
| PP_3899 | 4415059..4415391 | - | 333 | AAN69493.1 | conserved protein of unknown function, hicB family | Antitoxin Detail |
| PP_3900 | 4415400..4415648 | - | 249 | AAN69494.1 | hypothetical protein | Toxin Detail |
| PP_3901 | 4415798..4416058 | + | 261 | AAN69495.1 | conserved protein of unknown function | - |
| PP_3902 | 4416177..4416485 | - | 309 | AAN69496.1 | conserved protein of unknown function | - |
| PP_3903 | 4416475..4416639 | + | 165 | AAN69497.1 | conserved protein of unknown function | - |
| PP_3904 | 4416845..4417099 | - | 255 | AAN69498.1 | conserved protein of unknown function | - |
| PP_3905 | 4417108..4417659 | + | 552 | AAN69499.1 | Transcriptional regulator, LuxR family | - |
| PP_3906 | 4417679..4417948 | + | 270 | AAN69500.1 | conserved protein of unknown function | - |
| PP_3907 | 4417945..4418403 | + | 459 | AAN69501.1 | conserved protein of unknown function | - |
| PP_3908 | 4418485..4418835 | + | 351 | AAN69502.1 | conserved protein of unknown function | - |
| PP_3909 | 4418849..4419127 | - | 279 | AAN69503.1 | conserved protein of unknown function | - |
| PP_3910 | 4419234..4419785 | + | 552 | AAN69504.2 | conserved protein of unknown function | - |
| PP_3911 | 4419800..4420183 | + | 384 | AAN69505.1 | conserved protein of unknown function | - |
| PP_3912 | 4420251..4421912 | + | 1662 | AAN69506.1 | DNA-cytosine methyltransferase | - |
| PP_3913 | 4421921..4422598 | + | 678 | AAN69507.2 | protein of unknown function | - |
| PP_5645 | 4422648..4422947 | - | 300 | AMM02980.1 | conserved protein of unknown function | - |
| PP_3914 | 4423113..4423496 | + | 384 | AAN69508.1 | conserved protein of unknown function | - |
| PP_5646 | 4423493..4423771 | + | 279 | AMM02981.1 | protein of unknown function | - |
| PP_3915 | 4423768..4424091 | + | 324 | AAN69509.1 | conserved protein of unknown function | - |
| PP_3916 | 4424088..4424480 | + | 393 | AAN69510.1 | conserved protein of unknown function | - |
| PP_5647 | 4424670..4424942 | - | 273 | AMM02982.1 | conserved protein of unknown function | - |
| PP_3917 | 4425742..4426080 | + | 339 | AAN69511.1 | conserved protein of unknown function | - |
| PP_3919 | 4426120..4426365 | + | 246 | AAN69513.1 | conserved protein of unknown function | - |
| PP_3920 | 4426367..4427416 | + | 1050 | AAN69514.1 | hypothetical protein ; Integrase | Integrase |
| PP_3922 | 4427746..4428765 | - | 1020 | AAN69516.1 | putative inner membrane peptidase | - |
| PP_3923 | 4428963..4429673 | + | 711 | AAN69517.1 | Phosphoglycerate mutase | - |
| PP_3924 | 4429730..4430047 | + | 318 | AAN69518.1 | conserved protein of unknown function | - |
| PP_3925 | 4430231..4431298 | + | 1068 | AAN69519.1 | conserved protein of unknown function | - |
| PP_3926 | 4431335..4432102 | + | 768 | AAN69520.1 | short-chain dehydrogenase | - |
| PP_3927 | 4432103..4432924 | - | 822 | AAN69521.1 | Methyltransferase type 12 | - |
| PP_5648 | 4433094..4433444 | - | 351 | AMM02983.1 | conserved exported protein of unknown function | - |
| PP_3928 | 4433562..4433852 | + | 291 | AAN69522.1 | conserved exported protein of unknown function | - |
| PP_3929 | 4434015..4434281 | + | 267 | AAN69523.1 | conserved protein of unknown function | - |
| PP_3930 | 4434355..4434747 | + | 393 | AAN69524.1 | conserved exported protein of unknown function | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Pseudomonas putida KT2440 | Prophage | TA20570 | NC_002947 | 4377646..4431298 | 0 | |
| Pseudomonas putida strain PP1 | Prophage | TA119874 | NZ_CP036494 | 1754427..1816813 | 0.004 | |
| Pseudomonas putida strain A0_F0_I1 | Prophage | TA159236 | NZ_CP054264 | 4377690..4440076 | 0.004 | |
| Pseudomonas putida strain KT2440 isolate pnCas9-BEC6-C | Prophage | TA245527 | NZ_CP097527 | 4377657..4431309 | 0 | |
| Pseudomonas putida strain KT2440 isolate pMBEC6 | Prophage | TA245536 | NZ_CP097528 | 4377660..4431312 | 0 | |
| Pseudomonas putida strain KT2440 isolate pSEVA631 | Prophage | TA245545 | NZ_CP097529 | 4377506..4431158 | 0 | |
| Pseudomonas putida KT2440 | Prophage | TA20570 | NC_002947 | 4377646..4431298 | 0 |