Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   EL079_RS07935 Genome accession   NZ_LR134283
Coordinates   1606065..1606655 (+) Length   196 a.a.
NCBI ID   WP_003031812.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC10713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1601065..1611655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL079_RS07915 (NCTC10713_01625) - 1601774..1602232 (-) 459 WP_003032341.1 DUF3021 domain-containing protein -
  EL079_RS07920 (NCTC10713_01626) - 1602229..1602669 (-) 441 WP_003032335.1 LytTR family DNA-binding domain-containing protein -
  EL079_RS07925 (NCTC10713_01627) hexB 1602924..1604870 (+) 1947 WP_003032320.1 DNA mismatch repair endonuclease MutL Machinery gene
  EL079_RS07930 (NCTC10713_01628) - 1605059..1605994 (+) 936 Protein_1510 IS30 family transposase -
  EL079_RS07935 (NCTC10713_01629) ruvA 1606065..1606655 (+) 591 WP_003031812.1 Holliday junction branch migration protein RuvA Machinery gene
  EL079_RS07940 (NCTC10713_01630) - 1606666..1607244 (+) 579 WP_003031817.1 DNA-3-methyladenine glycosylase I -
  EL079_RS07945 (NCTC10713_01631) - 1607347..1607760 (-) 414 WP_018543619.1 EamA family transporter -
  EL079_RS07955 (NCTC10713_01632) cinA 1608360..1609631 (+) 1272 WP_003031814.1 competence/damage-inducible protein A Machinery gene
  EL079_RS07960 (NCTC10713_01633) recA 1609676..1610821 (+) 1146 WP_018543618.1 recombinase RecA Machinery gene
  EL079_RS07965 (NCTC10713_01634) spx 1610908..1611306 (+) 399 WP_003026638.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21598.08 Da        Isoelectric Point: 6.4894

>NTDB_id=999948 EL079_RS07935 WP_003031812.1 1606065..1606655(+) (ruvA) [Streptococcus anginosus strain NCTC10713]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVTPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=999948 EL079_RS07935 WP_003031812.1 1606065..1606655(+) (ruvA) [Streptococcus anginosus strain NCTC10713]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAAGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGCTTGGTGCAGGCCATTGAGCAGAAAAACATTAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACAGCCCAACAAATGGTGCTGGACTTAGAAGGTAAGGTTGTGGCAA
CAGGTGTTACCCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCTATGGAAGCTATGTTG
GCTCTGGGCTACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTCTTTGAAGGTACGACCGATACAGCTGAGAACTACAT
CAAGTCGGCTCTTAAAATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

85.787

100

0.862
  ruvA Streptococcus pneumoniae R6

85.787

100

0.862
  ruvA Streptococcus pneumoniae D39

85.787

100

0.862
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423

Multiple sequence alignment