Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMN13_RS11210 Genome accession   NZ_AP027203
Coordinates   2245136..2245582 (-) Length   148 a.a.
NCBI ID   WP_281970205.1    Uniprot ID   -
Organism   Polynucleobacter sp. SHI2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2240136..2250582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMN13_RS11190 (PSHI2_21910) - 2241290..2241784 (-) 495 WP_281970201.1 YqaA family protein -
  QMN13_RS11195 (PSHI2_21920) ilvA 2241821..2243341 (+) 1521 WP_281970202.1 threonine ammonia-lyase, biosynthetic -
  QMN13_RS11200 (PSHI2_21930) - 2243345..2244259 (+) 915 WP_281970203.1 5'-nucleotidase -
  QMN13_RS11205 (PSHI2_21940) queF 2244256..2245107 (+) 852 WP_281970204.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QMN13_RS11210 (PSHI2_21950) ssb 2245136..2245582 (-) 447 WP_281970205.1 single-stranded DNA-binding protein Machinery gene
  QMN13_RS11215 (PSHI2_21960) - 2245675..2246874 (-) 1200 WP_281970206.1 MFS transporter -
  QMN13_RS11220 (PSHI2_21970) uvrA 2246911..2249766 (+) 2856 WP_281970207.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16020.98 Da        Isoelectric Point: 5.9340

>NTDB_id=99994 QMN13_RS11210 WP_281970205.1 2245136..2245582(-) (ssb) [Polynucleobacter sp. SHI2]
MASVNKVIIVGNIGRDPETRVLPSGDALTNISVATSDRYKDKATGEMKETTEWHRITFFGKLAEIAGQYLKKGSQVYVEG
KLRTRKYTDQAGVEKYSTEIVADSMQMLGGKMGDTGGGSSAPSYAKERPEISNSASSSLGQMDDDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=99994 QMN13_RS11210 WP_281970205.1 2245136..2245582(-) (ssb) [Polynucleobacter sp. SHI2]
ATGGCATCAGTAAATAAAGTAATCATCGTAGGAAATATTGGAAGAGATCCAGAAACTCGTGTTTTACCAAGTGGTGATGC
GCTGACGAACATATCTGTAGCAACCTCCGACCGTTATAAGGATAAAGCCACAGGTGAAATGAAAGAAACGACCGAGTGGC
ATCGTATTACCTTTTTTGGAAAACTAGCAGAAATTGCTGGTCAATATTTAAAAAAAGGTTCCCAAGTATATGTAGAGGGT
AAGCTTCGCACAAGAAAATACACTGATCAGGCTGGGGTTGAAAAATATTCTACAGAAATTGTGGCAGATTCAATGCAAAT
GTTAGGTGGAAAAATGGGCGATACTGGTGGAGGCTCTTCTGCACCAAGCTATGCAAAAGAAAGACCTGAAATCTCTAACT
CCGCTAGTTCAAGTCTTGGTCAAATGGATGATGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

100

0.595
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.574
  ssb Neisseria meningitidis MC58

43.103

100

0.507
  ssb Neisseria gonorrhoeae MS11

42.529

100

0.5

Multiple sequence alignment