Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABFU06_RS07040 Genome accession   NZ_CP155938
Coordinates   1673319..1673837 (+) Length   172 a.a.
NCBI ID   WP_042598139.1    Uniprot ID   A0AAJ2X7D4
Organism   Xanthomonas campestris pv. raphani strain Xcc-R1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1668319..1678837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU06_RS07025 (ABFU06_07005) murD 1669437..1670843 (+) 1407 WP_228443982.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ABFU06_RS07030 (ABFU06_07010) - 1670997..1671797 (+) 801 WP_228443983.1 dienelactone hydrolase family protein -
  ABFU06_RS07035 (ABFU06_07015) - 1672039..1673037 (-) 999 WP_070690369.1 polyprenyl synthetase family protein -
  ABFU06_RS07040 (ABFU06_07020) ssb 1673319..1673837 (+) 519 WP_042598139.1 single-stranded DNA-binding protein Machinery gene
  ABFU06_RS07045 (ABFU06_07025) - 1674029..1674325 (+) 297 WP_223646011.1 hypothetical protein -
  ABFU06_RS07050 (ABFU06_07030) - 1674329..1676857 (+) 2529 WP_116923553.1 AAA family ATPase -
  ABFU06_RS07055 (ABFU06_07035) - 1676862..1678157 (+) 1296 WP_181920256.1 McrC family protein -
  ABFU06_RS07060 (ABFU06_07040) - 1678625..1678759 (+) 135 WP_256267714.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18602.51 Da        Isoelectric Point: 5.3177

>NTDB_id=999936 ABFU06_RS07040 WP_042598139.1 1673319..1673837(+) (ssb) [Xanthomonas campestris pv. raphani strain Xcc-R1]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGGQDYAPRRQQPAQQQSAP
PMDDFADDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=999936 ABFU06_RS07040 WP_042598139.1 1673319..1673837(+) (ssb) [Xanthomonas campestris pv. raphani strain Xcc-R1]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGAAGGCAATAACCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTTGGAAAATTGGGAGAGATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGCGGTGAAGGCGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCCCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGTGGCGGTCAGGACTACGCACCGCGCCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCG
CCGATGGATGATTTTGCGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.237

100

0.5
  ssb Glaesserella parasuis strain SC1401

46.154

100

0.488
  ssb Neisseria meningitidis MC58

45.455

100

0.465
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.465

Multiple sequence alignment