Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAID08_RS28040 Genome accession   NZ_CP155917
Coordinates   6140293..6140814 (-) Length   173 a.a.
NCBI ID   WP_026382027.1    Uniprot ID   A0A6S7E5D3
Organism   Achromobacter sp. EB05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6135293..6145814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAID08_RS28015 (AAID08_27995) - 6136237..6136854 (+) 618 WP_064523978.1 TetR/AcrR family transcriptional regulator -
  AAID08_RS28020 (AAID08_28000) - 6137166..6138020 (+) 855 WP_054500259.1 isochorismatase family protein -
  AAID08_RS28025 (AAID08_28005) - 6138110..6138700 (-) 591 WP_064523974.1 TetR/AcrR family transcriptional regulator -
  AAID08_RS28030 (AAID08_28010) - 6138831..6139136 (-) 306 WP_054500257.1 DUF4148 domain-containing protein -
  AAID08_RS28035 (AAID08_28015) - 6139217..6139522 (-) 306 WP_395757189.1 DUF4148 domain-containing protein -
  AAID08_RS28040 (AAID08_28020) ssb 6140293..6140814 (-) 522 WP_026382027.1 single-stranded DNA-binding protein Machinery gene
  AAID08_RS28045 (AAID08_28025) - 6141097..6142281 (-) 1185 WP_054500255.1 MFS transporter -
  AAID08_RS28050 (AAID08_28030) uvrA 6142416..6145271 (+) 2856 WP_395757190.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18656.68 Da        Isoelectric Point: 5.9656

>NTDB_id=999677 AAID08_RS28040 WP_026382027.1 6140293..6140814(-) (ssb) [Achromobacter sp. EB05]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=999677 AAID08_RS28040 WP_026382027.1 6140293..6140814(-) (ssb) [Achromobacter sp. EB05]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCATCGGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACTCGCAAGTGGCAGGACAAGGACACTGGCGCTGACCGCTACAGCACCGAAATCGTGGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGCGGTGGCGGCGGCTACGACGACGCGCCCGCGC
GCCAGCCGCAGCAGCGCGCCCCGGCACAGCGCCCGGCGCCGCAGCAGCGTCCCGCGCCCCAGGCAGCGCCCGCCGGCGGC
GGCGCCAACCTGGCCGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7E5D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532

Multiple sequence alignment