Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABEB34_RS00630 Genome accession   NZ_CP155837
Coordinates   136373..136585 (-) Length   70 a.a.
NCBI ID   WP_406851039.1    Uniprot ID   -
Organism   Herbaspirillum huttiense strain CLJ02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 131373..141585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEB34_RS00600 - 132499..132813 (+) 315 WP_338033881.1 EamA family transporter -
  ABEB34_RS00605 - 132822..133616 (+) 795 WP_338033882.1 DMT family transporter -
  ABEB34_RS00610 - 133684..134481 (+) 798 WP_166675023.1 GNAT family N-acetyltransferase -
  ABEB34_RS00615 - 134591..134692 (+) 102 Protein_122 helix-turn-helix domain-containing protein -
  ABEB34_RS00620 - 134914..135168 (-) 255 WP_406851292.1 hypothetical protein -
  ABEB34_RS00625 - 135790..136170 (+) 381 WP_134221041.1 helix-turn-helix domain-containing protein -
  ABEB34_RS00630 comM 136373..136585 (-) 213 WP_406851039.1 magnesium chelatase domain-containing protein Machinery gene
  ABEB34_RS00635 - 136659..136904 (-) 246 WP_008334075.1 accessory factor UbiK family protein -
  ABEB34_RS00640 - 136963..137193 (-) 231 WP_151201270.1 hypothetical protein -
  ABEB34_RS00645 - 137360..138142 (+) 783 WP_034334997.1 TorF family putative porin -
  ABEB34_RS00650 - 138155..138493 (+) 339 WP_006713297.1 P-II family nitrogen regulator -
  ABEB34_RS00655 - 138509..140044 (+) 1536 WP_134134532.1 ammonium transporter -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7555.81 Da        Isoelectric Point: 9.4985

>NTDB_id=999646 ABEB34_RS00630 WP_406851039.1 136373..136585(-) (comM) [Herbaspirillum huttiense strain CLJ02]
MSLAVLRSRALAGMSAPPVTVEVHLANGLPAFTIVGLPEAEVKEAKDRVRAALQNARFEFPARRIECSQP

Nucleotide


Download         Length: 213 bp        

>NTDB_id=999646 ABEB34_RS00630 WP_406851039.1 136373..136585(-) (comM) [Herbaspirillum huttiense strain CLJ02]
ATGAGCCTGGCAGTTTTGCGCAGCCGCGCCCTGGCCGGCATGAGCGCCCCGCCGGTGACGGTCGAGGTGCATCTGGCCAA
TGGCTTGCCGGCCTTCACCATCGTCGGACTCCCCGAGGCCGAGGTGAAGGAAGCCAAGGACCGCGTCCGGGCGGCGCTGC
AAAACGCCCGGTTTGAATTCCCCGCCCGCCGCATTGAATGTAGTCAACCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

66.154

92.857

0.614
  comM Haemophilus influenzae Rd KW20

63.235

97.143

0.614
  comM Glaesserella parasuis strain SC1401

60.294

97.143

0.586
  comM Vibrio campbellii strain DS40M4

61.538

92.857

0.571
  comM Legionella pneumophila str. Paris

61.538

92.857

0.571
  comM Legionella pneumophila strain ERS1305867

61.538

92.857

0.571

Multiple sequence alignment