Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ABFJ87_RS01835 | Genome accession | NZ_CP155816 |
| Coordinates | 411348..411851 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CUBIST-18 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 407288..432471 | 411348..411851 | within | 0 |
Gene organization within MGE regions
Location: 407288..432471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFJ87_RS01805 (ABFJ87_01800) | - | 407288..408133 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| ABFJ87_RS01810 (ABFJ87_01805) | - | 408287..409168 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| ABFJ87_RS01815 (ABFJ87_01810) | - | 409198..409401 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ABFJ87_RS01820 (ABFJ87_01815) | ychF | 409413..410510 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ABFJ87_RS01825 (ABFJ87_01820) | - | 410596..410787 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| ABFJ87_RS01830 (ABFJ87_01825) | rpsF | 411031..411327 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ABFJ87_RS01835 (ABFJ87_01830) | ssbA | 411348..411851 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ABFJ87_RS01840 (ABFJ87_01835) | rpsR | 411903..412145 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ABFJ87_RS01845 (ABFJ87_01840) | - | 412377..413096 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| ABFJ87_RS01850 (ABFJ87_01845) | - | 413209..414423 (-) | 1215 | WP_000270135.1 | site-specific integrase | - |
| ABFJ87_RS01855 (ABFJ87_01850) | - | 414584..415207 (-) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| ABFJ87_RS01860 (ABFJ87_01855) | - | 415356..415520 (+) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| ABFJ87_RS01865 (ABFJ87_01860) | - | 415521..415793 (+) | 273 | WP_001138305.1 | helix-turn-helix domain-containing protein | - |
| ABFJ87_RS01870 (ABFJ87_01865) | - | 415805..415978 (+) | 174 | WP_031870418.1 | hypothetical protein | - |
| ABFJ87_RS01875 (ABFJ87_01870) | - | 415960..416148 (+) | 189 | WP_031793922.1 | hypothetical protein | - |
| ABFJ87_RS01880 (ABFJ87_01875) | - | 416150..416533 (+) | 384 | WP_000403837.1 | hypothetical protein | - |
| ABFJ87_RS01885 (ABFJ87_01880) | tscT | 416534..416860 (+) | 327 | WP_001103967.1 | type II toxin-antitoxin system toxin TscT | - |
| ABFJ87_RS01890 (ABFJ87_01885) | - | 416925..417794 (+) | 870 | WP_099596627.1 | primase alpha helix C-terminal domain-containing protein | - |
| ABFJ87_RS01895 (ABFJ87_01890) | - | 417808..419517 (+) | 1710 | WP_000447468.1 | DUF927 domain-containing protein | - |
| ABFJ87_RS01900 (ABFJ87_01895) | - | 419827..420207 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| ABFJ87_RS01905 (ABFJ87_01900) | - | 420204..420845 (+) | 642 | WP_001019762.1 | hypothetical protein | - |
| ABFJ87_RS01910 (ABFJ87_01905) | - | 421553..421897 (+) | 345 | WP_001288442.1 | hypothetical protein | - |
| ABFJ87_RS01915 (ABFJ87_01910) | - | 421928..422581 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| ABFJ87_RS01920 (ABFJ87_01915) | - | 422634..423161 (+) | 528 | WP_000771361.1 | spore coat protein | - |
| ABFJ87_RS01925 (ABFJ87_01920) | - | 423293..423505 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| ABFJ87_RS01930 (ABFJ87_01925) | - | 423502..424071 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| ABFJ87_RS01935 (ABFJ87_01935) | - | 424348..425316 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| ABFJ87_RS01940 (ABFJ87_01940) | - | 425494..425895 (+) | 402 | WP_099596628.1 | pathogenicity island protein | - |
| ABFJ87_RS01945 (ABFJ87_01945) | - | 426013..426525 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| ABFJ87_RS01950 (ABFJ87_01950) | - | 426541..426720 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| ABFJ87_RS01955 (ABFJ87_01955) | - | 427523..428461 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| ABFJ87_RS01960 (ABFJ87_01960) | - | 428500..429213 (-) | 714 | Protein_389 | tyrosine-type recombinase/integrase | - |
| ABFJ87_RS01965 (ABFJ87_01965) | selX | 429419..430030 (+) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| ABFJ87_RS01970 (ABFJ87_01970) | - | 430399..430767 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| ABFJ87_RS01975 (ABFJ87_01975) | - | 430948..431520 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ABFJ87_RS01980 (ABFJ87_01980) | - | 431657..431920 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| ABFJ87_RS01985 (ABFJ87_01985) | - | 432220..432471 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=999484 ABFJ87_RS01835 WP_000934799.1 411348..411851(+) (ssbA) [Staphylococcus aureus strain CUBIST-18]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=999484 ABFJ87_RS01835 WP_000934799.1 411348..411851(+) (ssbA) [Staphylococcus aureus strain CUBIST-18]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |