Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABEG41_RS12430 Genome accession   NZ_CP155795
Coordinates   2412185..2412616 (-) Length   143 a.a.
NCBI ID   WP_015714255.1    Uniprot ID   -
Organism   Bacillus subtilis strain D137     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407185..2417616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEG41_RS12380 (ABEG41_12380) sinI 2407379..2407552 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  ABEG41_RS12385 (ABEG41_12385) sinR 2407586..2407921 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ABEG41_RS12390 (ABEG41_12390) tasA 2408014..2408799 (-) 786 WP_015714250.1 biofilm matrix protein TasA -
  ABEG41_RS12395 (ABEG41_12395) sipW 2408863..2409435 (-) 573 WP_003230181.1 signal peptidase I -
  ABEG41_RS12400 (ABEG41_12400) tapA 2409419..2410180 (-) 762 WP_015714251.1 amyloid fiber anchoring/assembly protein TapA -
  ABEG41_RS12405 (ABEG41_12405) yqzG 2410452..2410778 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ABEG41_RS12410 (ABEG41_12410) spoIIT 2410820..2410999 (-) 180 WP_014480252.1 YqzE family protein -
  ABEG41_RS12415 (ABEG41_12415) comGG 2411070..2411444 (-) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  ABEG41_RS12420 (ABEG41_12420) comGF 2411445..2411828 (-) 384 WP_038429292.1 ComG operon protein ComGF Machinery gene
  ABEG41_RS12425 (ABEG41_12425) comGE 2411854..2412201 (-) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  ABEG41_RS12430 (ABEG41_12430) comGD 2412185..2412616 (-) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  ABEG41_RS12435 (ABEG41_12435) comGC 2412606..2412902 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  ABEG41_RS12440 (ABEG41_12440) comGB 2412916..2413953 (-) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  ABEG41_RS12445 (ABEG41_12445) comGA 2413940..2415010 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  ABEG41_RS12450 (ABEG41_12450) - 2415222..2415419 (-) 198 WP_014480259.1 CBS domain-containing protein -
  ABEG41_RS12455 (ABEG41_12455) corA 2415421..2416374 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.78 Da        Isoelectric Point: 10.2235

>NTDB_id=999397 ABEG41_RS12430 WP_015714255.1 2412185..2412616(-) (comGD) [Bacillus subtilis strain D137]
MNIKLNEEKGFTLLESLLVLSLASILLIAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKIFFHKKEYQLV
IGDTVIERPYARGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=999397 ABEG41_RS12430 WP_015714255.1 2412185..2412616(-) (comGD) [Bacillus subtilis strain D137]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GATTGCCGTCTTCACCACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCTGCAAGGCAGTTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTTTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAAGGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

96.503

100

0.965

Multiple sequence alignment