Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ABEG41_RS12385 | Genome accession | NZ_CP155795 |
| Coordinates | 2407586..2407921 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain D137 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2402586..2412921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEG41_RS12365 (ABEG41_12365) | gcvT | 2403178..2404266 (-) | 1089 | WP_015714248.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABEG41_RS12370 (ABEG41_12370) | yqhH | 2404708..2406381 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| ABEG41_RS12375 (ABEG41_12375) | yqhG | 2406402..2407196 (+) | 795 | WP_015714249.1 | YqhG family protein | - |
| ABEG41_RS12380 (ABEG41_12380) | sinI | 2407379..2407552 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| ABEG41_RS12385 (ABEG41_12385) | sinR | 2407586..2407921 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| ABEG41_RS12390 (ABEG41_12390) | tasA | 2408014..2408799 (-) | 786 | WP_015714250.1 | biofilm matrix protein TasA | - |
| ABEG41_RS12395 (ABEG41_12395) | sipW | 2408863..2409435 (-) | 573 | WP_003230181.1 | signal peptidase I | - |
| ABEG41_RS12400 (ABEG41_12400) | tapA | 2409419..2410180 (-) | 762 | WP_015714251.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABEG41_RS12405 (ABEG41_12405) | yqzG | 2410452..2410778 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| ABEG41_RS12410 (ABEG41_12410) | spoIIT | 2410820..2410999 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| ABEG41_RS12415 (ABEG41_12415) | comGG | 2411070..2411444 (-) | 375 | WP_015714252.1 | ComG operon protein ComGG | Machinery gene |
| ABEG41_RS12420 (ABEG41_12420) | comGF | 2411445..2411828 (-) | 384 | WP_038429292.1 | ComG operon protein ComGF | Machinery gene |
| ABEG41_RS12425 (ABEG41_12425) | comGE | 2411854..2412201 (-) | 348 | WP_015714254.1 | ComG operon protein 5 | Machinery gene |
| ABEG41_RS12430 (ABEG41_12430) | comGD | 2412185..2412616 (-) | 432 | WP_015714255.1 | comG operon protein ComGD | Machinery gene |
| ABEG41_RS12435 (ABEG41_12435) | comGC | 2412606..2412902 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=999393 ABEG41_RS12385 WP_003226345.1 2407586..2407921(+) (sinR) [Bacillus subtilis strain D137]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=999393 ABEG41_RS12385 WP_003226345.1 2407586..2407921(+) (sinR) [Bacillus subtilis strain D137]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |