Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ABD409_RS01460 Genome accession   NZ_CP155741
Coordinates   271725..273227 (+) Length   500 a.a.
NCBI ID   WP_011017334.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 400/03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 266725..278227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS01445 (ABD409_01435) - 266769..267950 (-) 1182 WP_023612404.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ABD409_RS01450 (ABD409_01440) pbp3 268118..269350 (-) 1233 WP_023612400.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABD409_RS01455 (ABD409_01445) amiA 269681..271660 (+) 1980 WP_023612402.1 peptide ABC transporter substrate-binding protein Regulator
  ABD409_RS01460 (ABD409_01450) amiC 271725..273227 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ABD409_RS01465 (ABD409_01455) amiD 273227..274153 (+) 927 WP_023612408.1 oligopeptide ABC transporter permease OppC Regulator
  ABD409_RS01470 (ABD409_01460) amiE 274162..275232 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ABD409_RS01475 (ABD409_01465) amiF 275225..276148 (+) 924 WP_023612424.1 ABC transporter ATP-binding protein Regulator
  ABD409_RS01480 - 276186..276275 (-) 90 WP_110002794.1 IS3 family transposase -
  ABD409_RS01485 (ABD409_01470) - 276296..276475 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56149.52 Da        Isoelectric Point: 10.2222

>NTDB_id=999242 ABD409_RS01460 WP_011017334.1 271725..273227(+) (amiC) [Streptococcus pyogenes strain 400/03]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYEKYIDSLGNGWQLKRFPTSKQFYAIRNIPIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=999242 ABD409_RS01460 WP_011017334.1 271725..273227(+) (amiC) [Streptococcus pyogenes strain 400/03]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAACAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATGAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTCCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTACCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGCGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.6

100

0.596
  amiC Streptococcus thermophilus LMD-9

59.2

100

0.592
  amiC Streptococcus thermophilus LMG 18311

59.2

100

0.592

Multiple sequence alignment