Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ABD409_RS01470 Genome accession   NZ_CP155741
Coordinates   274162..275232 (+) Length   356 a.a.
NCBI ID   WP_023612409.1    Uniprot ID   A0A5S4TIQ7
Organism   Streptococcus pyogenes strain 400/03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 269162..280232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD409_RS01455 (ABD409_01445) amiA 269681..271660 (+) 1980 WP_023612402.1 peptide ABC transporter substrate-binding protein Regulator
  ABD409_RS01460 (ABD409_01450) amiC 271725..273227 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ABD409_RS01465 (ABD409_01455) amiD 273227..274153 (+) 927 WP_023612408.1 oligopeptide ABC transporter permease OppC Regulator
  ABD409_RS01470 (ABD409_01460) amiE 274162..275232 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ABD409_RS01475 (ABD409_01465) amiF 275225..276148 (+) 924 WP_023612424.1 ABC transporter ATP-binding protein Regulator
  ABD409_RS01480 - 276186..276275 (-) 90 WP_110002794.1 IS3 family transposase -
  ABD409_RS01485 (ABD409_01470) - 276296..276475 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39689.75 Da        Isoelectric Point: 5.6686

>NTDB_id=999244 ABD409_RS01470 WP_023612409.1 274162..275232(+) (amiE) [Streptococcus pyogenes strain 400/03]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TDLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHAKAKEMALDYMNKVGIPNAKKRFEDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLADDSGELYAIPGTPPSLYSPIIGDAFALRSEYAMVLDFEKAPPAINVSETHWAK
TWLLHPEAPKVQKPEVIQDLHQKILRKMSQQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=999244 ABD409_RS01470 WP_023612409.1 274162..275232(+) (amiE) [Streptococcus pyogenes strain 400/03]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTAGAATTTGATGTGCGTGATCGTGTTTTAACAGC
TATCCGTAACGTCTCACTGGAACTTGTTGAAGGAGAAGTCCTTGCTTTTGTAGGGGAATCAGGCTCAGGTAAATCTGTTT
TAACAAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGCATTGCTAATGGTTCAATTGTCTATCGTGGGCAAGAATTG
ACAGATTTAAAAACAAATAAAGAGTGGGCAAAGATTCGCGGCTCAAAAATCGCAACGATTTTCCAAGACCCAATGACCAG
TCTTAGTCCCATTAAAACTATCGGTAGCCAAATCACAGAAGTGATTATTAAGCACCAAAAAGTAAGTCATGCCAAAGCTA
AAGAAATGGCCCTTGATTACATGAATAAAGTGGGTATCCCAAATGCCAAAAAACGCTTTGAAGATTACCCATTTGAGTAT
TCAGGAGGAATGCGTCAACGTATTGTTATCGCTATTGCTTTAGCTTGTCGCCCAGATATTCTTATCTGTGATGAGCCAAC
AACAGCCCTTGATGTGACTATTCAAGCTCAAATCGTTGAGTTATTGAAGTCGCTTCAACGAGAATATCATTTCACCATTA
TCTTTATTACGCACGATTTAGGTGTTGTGGCAAGCATTGCAGATAAAGTGGCTGTCATGTATGCAGGAGAAATTGTTGAA
TTTGGAACAGTCGAAGAGATTTTCTATGATCCAAGACACCCCTATACATGGAGTTTGCTGTCTAGCTTACCGCAGTTGGC
AGATGATTCTGGTGAACTTTACGCTATTCCAGGAACGCCTCCATCACTTTATTCACCAATTATCGGAGATGCCTTTGCAC
TTCGCTCAGAATATGCTATGGTTTTAGACTTTGAAAAAGCACCTCCGGCGATTAACGTATCTGAGACTCATTGGGCCAAA
ACATGGCTTTTACACCCAGAGGCTCCAAAAGTTCAAAAACCAGAAGTCATTCAAGATTTGCATCAAAAAATCTTAAGGAA
AATGTCACAACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TIQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

76.944

100

0.778
  amiE Streptococcus thermophilus LMG 18311

75.833

100

0.767
  amiE Streptococcus thermophilus LMD-9

75.833

100

0.767
  oppD Streptococcus mutans UA159

56.677

94.663

0.537

Multiple sequence alignment