Detailed information NTG0999245

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ABD409_RS01475
• Genome accession: NZ_CP155741
• Coordinates: 275225..276148 (+)
• Length: 307 a.a.
• NCBI ID: WP_023612424.1
• Uniprot ID: A0A5S4TJJ9
• Organism: Streptococcus pyogenes strain 400/03
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 270225..281148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABD409_RS01460 (ABD409_01450)	amiC	271725..273227 (+)	1503	WP_011017334.1	ABC transporter permease	Regulator
ABD409_RS01465 (ABD409_01455)	amiD	273227..274153 (+)	927	WP_023612408.1	oligopeptide ABC transporter permease OppC	Regulator
ABD409_RS01470 (ABD409_01460)	amiE	274162..275232 (+)	1071	WP_023612409.1	ABC transporter ATP-binding protein	Regulator
ABD409_RS01475 (ABD409_01465)	amiF	275225..276148 (+)	924	WP_023612424.1	ABC transporter ATP-binding protein	Regulator
ABD409_RS01480	-	276186..276275 (-)	90	WP_110002794.1	IS3 family transposase	-
ABD409_RS01485 (ABD409_01470)	-	276296..276475 (-)	180	WP_023612403.1	hypothetical protein	-

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34741.94 Da
• Isoelectric Point: 6.4036

>NTDB_id=999245 ABD409_RS01475 WP_023612424.1 275225..276148(+) (amiF) [Streptococcus pyogenes strain 400/03]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGQILYDGKVINGRKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERQKELVVYYPDQHDYTLDKPSMVEIKPNHFVWANQAEIEKYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=999245 ABD409_RS01475 WP_023612424.1 275225..276148(+) (amiF) [Streptococcus pyogenes strain 400/03]
ATGTCTGAGAAATTAGTCGAAGTAAAAGACCTAGAAATTTCCTTCGGAGAAGGAAAGAAAAAATTTGTTGCAGTTAAAAA
TGCTAATTTCTTTATTAAAAAAGGAGAAACCTTTTCTTTAGTTGGAGAGTCTGGGAGTGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAACGATACTAGTTCAGGTCAAATTTTATACGATGGGAAAGTAATTAATGGCAGAAAATCAAAATCA
GAAGCCAATGAGCTCATTCGTAAAATTCAAATGATTTTCCAAGATCCCGCTGCTAGTTTGAATGAACGGGCAACCGTTGA
CTACATCATTTCAGAAGGTCTTTATAACTTTAATCTGTTTAAAACAGAGGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGCTATCAGAGCATTTGACGCGCTACCCTCATGAATTTTCAGGAGGTCAACGTCAGCGAATCGGT
ATCGCTAGAGCCCTAGTAATGAACCCTGAATTCGTTATTGCTGATGAACCGATTTCAGCTTTGGACGTTTCCGTTCGCGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCCGAAAAAGGTTTGACTTATCTCTTCATTGCCCATGATCTTTCAGTCG
TTCGCTTTATTTCAGATCGTATTGCGGTTATCCATAAAGGGGTTATTGTAGAAGTTGCAGAAACAGAAGAACTGTTTAAT
AACCCAATTCATCCCTACACCCAATCTTTGTTATCAGCCGTGCCTATCCCAGATCCAATTTTAGAGCGTCAAAAAGAACT
TGTTGTCTATTATCCAGACCAGCATGATTATACATTAGATAAGCCATCAATGGTTGAAATCAAACCAAATCACTTTGTTT
GGGCAAACCAAGCAGAAATTGAAAAATATCAAAAAGAATTGTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-261)

3D structure

• AlphaFold DB: A0A5S4TJJ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	82.353	99.674	0.821
amiF	Streptococcus thermophilus LMD-9	82.026	99.674	0.818
amiF	Streptococcus salivarius strain HSISS4	82.026	99.674	0.818