Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABD412_RS05425 Genome accession   NZ_CP155737
Coordinates   1049954..1050445 (-) Length   163 a.a.
NCBI ID   WP_021341162.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 9606/11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1044954..1055445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD412_RS05350 (ABD412_05325) - 1045155..1045589 (-) 435 WP_050336147.1 ArpU family phage packaging/lysis transcriptional regulator -
  ABD412_RS05355 (ABD412_05330) - 1045872..1046042 (-) 171 WP_002987493.1 hypothetical protein -
  ABD412_RS05360 (ABD412_05335) - 1046039..1046542 (-) 504 WP_032461638.1 DUF1642 domain-containing protein -
  ABD412_RS05365 (ABD412_05340) - 1046539..1046832 (-) 294 WP_032461639.1 hypothetical protein -
  ABD412_RS05370 (ABD412_05345) - 1046829..1047014 (-) 186 WP_011054812.1 hypothetical protein -
  ABD412_RS05375 (ABD412_05350) - 1047039..1047227 (-) 189 WP_369303531.1 hypothetical protein -
  ABD412_RS05380 (ABD412_05355) - 1047230..1047565 (-) 336 WP_011054813.1 hypothetical protein -
  ABD412_RS05385 (ABD412_05360) - 1047568..1047852 (-) 285 WP_032461310.1 hypothetical protein -
  ABD412_RS05390 (ABD412_05365) - 1047849..1048019 (-) 171 WP_164977039.1 hypothetical protein -
  ABD412_RS05395 (ABD412_05370) - 1048016..1048429 (-) 414 WP_011054815.1 YopX family protein -
  ABD412_RS05400 (ABD412_05375) - 1048426..1048710 (-) 285 WP_032461640.1 DUF3310 domain-containing protein -
  ABD412_RS05405 (ABD412_05380) - 1048704..1048955 (-) 252 WP_032459778.1 hypothetical protein -
  ABD412_RS05410 (ABD412_05385) - 1048952..1049308 (-) 357 WP_011018138.1 hypothetical protein -
  ABD412_RS05415 (ABD412_05390) - 1049305..1049745 (-) 441 WP_011018139.1 RusA family crossover junction endodeoxyribonuclease -
  ABD412_RS05420 (ABD412_05395) - 1049745..1049948 (-) 204 WP_011106686.1 hypothetical protein -
  ABD412_RS05425 (ABD412_05400) ssb 1049954..1050445 (-) 492 WP_021341162.1 single-stranded DNA-binding protein Machinery gene
  ABD412_RS05430 (ABD412_05405) - 1050438..1051112 (-) 675 WP_021340879.1 ERF family protein -
  ABD412_RS05435 (ABD412_05410) - 1051113..1051595 (-) 483 WP_021341163.1 siphovirus Gp157 family protein -
  ABD412_RS05440 (ABD412_05415) - 1051617..1051871 (-) 255 WP_021341161.1 hypothetical protein -
  ABD412_RS05445 (ABD412_05420) - 1051852..1052208 (-) 357 WP_021341157.1 HTH domain-containing protein -
  ABD412_RS05450 (ABD412_05425) - 1052219..1052356 (-) 138 WP_011018145.1 hypothetical protein -
  ABD412_RS05455 (ABD412_05430) - 1052347..1053129 (-) 783 WP_021341158.1 ATP-binding protein -
  ABD412_RS05460 (ABD412_05435) - 1053116..1053919 (-) 804 WP_021340639.1 DnaD domain protein -
  ABD412_RS05465 (ABD412_05440) - 1054035..1054478 (-) 444 WP_012560973.1 hypothetical protein -
  ABD412_RS05470 (ABD412_05445) - 1054534..1054914 (+) 381 WP_000568478.1 hypothetical protein -
  ABD412_RS05475 (ABD412_05450) - 1054904..1055176 (-) 273 WP_000370473.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18096.94 Da        Isoelectric Point: 4.9332

>NTDB_id=999031 ABD412_RS05425 WP_021341162.1 1049954..1050445(-) (ssb) [Streptococcus pyogenes strain 9606/11]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRATREGGLTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=999031 ABD412_RS05425 WP_021341162.1 1049954..1050445(-) (ssb) [Streptococcus pyogenes strain 9606/11]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAACTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTTAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGCAATTCAAACCCAATGGATATTTCAGACGATGAT
CTGCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.571

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.031

0.362
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment