Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ABD408_RS01390 Genome accession   NZ_CP155735
Coordinates   263679..265658 (+) Length   659 a.a.
NCBI ID   WP_023612402.1    Uniprot ID   A0A5S4TDS8
Organism   Streptococcus pyogenes strain 4958/15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258679..270658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD408_RS01370 (ABD408_01360) sufU 258725..259204 (+) 480 WP_023612414.1 Fe-S cluster assembly sulfur transfer protein SufU -
  ABD408_RS01375 (ABD408_01365) sufB 259197..260615 (+) 1419 WP_002986015.1 Fe-S cluster assembly protein SufB -
  ABD408_RS01380 (ABD408_01370) - 260767..261948 (-) 1182 WP_023612404.1 D-alanyl-D-alanine carboxypeptidase family protein -
  ABD408_RS01385 (ABD408_01375) pbp3 262116..263348 (-) 1233 WP_023612400.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABD408_RS01390 (ABD408_01380) amiA 263679..265658 (+) 1980 WP_023612402.1 peptide ABC transporter substrate-binding protein Regulator
  ABD408_RS01395 (ABD408_01385) amiC 265723..267225 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ABD408_RS01400 (ABD408_01390) amiD 267225..268151 (+) 927 WP_023612408.1 oligopeptide ABC transporter permease OppC Regulator
  ABD408_RS01405 (ABD408_01395) amiE 268160..269230 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ABD408_RS01410 (ABD408_01400) amiF 269223..270146 (+) 924 WP_023612424.1 ABC transporter ATP-binding protein Regulator
  ABD408_RS01415 - 270184..270273 (-) 90 WP_110002794.1 IS3 family transposase -
  ABD408_RS01420 (ABD408_01405) - 270294..270473 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72426.93 Da        Isoelectric Point: 5.1180

>NTDB_id=998894 ABD408_RS01390 WP_023612402.1 263679..265658(+) (amiA) [Streptococcus pyogenes strain 4958/15]
MKKSKWLAAVSVAILSVSALAACGNKNASGGSEATKTYKYVFVNDPKSLDYILTNGGGTTDVITQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDDKSDALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGESDFGSEVEKEMAKLGDEWKDVN
LADAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVGGGSVIQKLGIKAGQNKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQFEKAKEKWMK
AKAKSNAQYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=998894 ABD408_RS01390 WP_023612402.1 263679..265658(+) (amiA) [Streptococcus pyogenes strain 4958/15]
ATGAAGAAAAGTAAATGGTTGGCAGCTGTAAGTGTTGCGATCTTGTCAGTATCCGCTTTGGCAGCTTGTGGTAATAAAAA
TGCTTCAGGTGGCTCAGAAGCTACAAAAACCTACAAGTACGTTTTTGTTAACGATCCAAAATCATTGGATTATATTTTGA
CTAATGGCGGTGGAACGACTGATGTGATAACACAAATGGTTGATGGTCTTTTGGAAAACGATGAGTATGGTAATTTAGTA
CCATCACTTGCTAAAGATTGGAAGGTTTCAAAAGACGGTCTGACTTATACTTATACTCTTCGCGATGGTGTCTCTTGGTA
TACGGCTGATGGTGAAGAATATGCCCCAGTAACAGCAGAAGATTTTGTGACTGGTTTGAAGCACGCGGTTGACGATAAAT
CAGATGCTCTTTACGTTGTTGAAGATTCAATAAAAAACTTAAAGGCTTACCAAAATGGTGAAGTAGATTTTAAAGAAGTT
GGTGTCAAAGCCCTTGACGATAAAACTGTTCAGTATACTTTGAACAAGCCTGAAAGCTACTGGAATTCAAAAACAACTTA
TAGTGTGCTTTTCCCAGTTAATGCGAAATTTTTGAAGTCAAAAGGTAAAGATTTTGGTACAACCGATCCATCATCAATCC
TTGTTAATGGTGCTTACTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCGTTCTATAAGAACTTTGA
CAAGGGTGAGTTCACTGTCGCACGACTTTACCCAAATGACCCTACCTACAAATCAGCTAAGAAAAACTATGCTGATAATA
TTACTTACGGAATGTTGACTGGAGATATCCGTCATTTAACATGGAATTTGAACCGTACTTCTTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGATTTTCGTCAAGCTATTCAGTTTGCTTTTGACCG
AGCGTCATTCCAAGCCCAAACTGCAGGTCAAGATGCTAAAACAAAAGCCTTACGTAACATGCTTGTCCCACCAACATTTG
TGACCATTGGAGAAAGTGATTTTGGTTCAGAAGTTGAAAAGGAAATGGCAAAACTTGGTGATGAATGGAAAGACGTTAAC
TTAGCTGATGCTCAAGATGGTTTCTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGTGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAGTCTT
TCAAACAATCTGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACATCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGATATCATTTCATCATGGTGGGGACCAGACTACCAAGA
TCCACGGACCTACCTTGACATCATGAGTCCAGTAGGTGGTGGATCTGTTATCCAAAAACTTGGAATCAAAGCAGGTCAAA
ATAAGGATGTTGTGGCAGCTGCAGGCCTTGATACTTACCAAACTCTCCTTGATGAAGCAGCAGCAATTACAGACGACAAC
GATGCGCGCTATAAAGCTTACGCAAAAGCACAAGCCTACCTTACAGATAGTGCCGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCCGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGTGCTAAAGGTCCTGCTTCTGTAT
ATTATTATAAAGGAATGAAACTTCAAGATAAACCTGTCACAGCAAAACAATTCGAAAAAGCAAAAGAAAAATGGATGAAA
GCAAAGGCTAAGTCAAATGCACAATATGCTGAGAAGTTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4TDS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.83

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

50.075

100

0.504
  amiA3 Streptococcus thermophilus LMD-9

49.774

100

0.501

Multiple sequence alignment