Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABD408_RS01400 Genome accession   NZ_CP155735
Coordinates   267225..268151 (+) Length   308 a.a.
NCBI ID   WP_023612408.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 4958/15     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 262225..273151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABD408_RS01390 (ABD408_01380) amiA 263679..265658 (+) 1980 WP_023612402.1 peptide ABC transporter substrate-binding protein Regulator
  ABD408_RS01395 (ABD408_01385) amiC 265723..267225 (+) 1503 WP_011017334.1 ABC transporter permease Regulator
  ABD408_RS01400 (ABD408_01390) amiD 267225..268151 (+) 927 WP_023612408.1 oligopeptide ABC transporter permease OppC Regulator
  ABD408_RS01405 (ABD408_01395) amiE 268160..269230 (+) 1071 WP_023612409.1 ABC transporter ATP-binding protein Regulator
  ABD408_RS01410 (ABD408_01400) amiF 269223..270146 (+) 924 WP_023612424.1 ABC transporter ATP-binding protein Regulator
  ABD408_RS01415 - 270184..270273 (-) 90 WP_110002794.1 IS3 family transposase -
  ABD408_RS01420 (ABD408_01405) - 270294..270473 (-) 180 WP_023612403.1 hypothetical protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34876.83 Da        Isoelectric Point: 8.5670

>NTDB_id=998896 ABD408_RS01400 WP_023612408.1 267225..268151(+) (amiD) [Streptococcus pyogenes strain 4958/15]
MESIDKSKFRFVERDSEASEVIDTPAYSYWKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNINDFSKR
YIWPNAEYWFGTDKNGQSLFDGVWYGARNSILISVIATLINITIGVVLGAIWGVSKAFDKVMIEIYNIISNIPSMLIIIV
LTYSLGAGFWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQLISVIMTMLSQMLPVYVS
SEAFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLVTLILVSLPLYIVGQNLADASDPRSHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=998896 ABD408_RS01400 WP_023612408.1 267225..268151(+) (amiD) [Streptococcus pyogenes strain 4958/15]
ATGGAATCGATTGATAAATCTAAATTTCGATTTGTTGAGCGCGATAGTGAAGCCTCCGAAGTGATTGATACCCCTGCTTA
TTCTTACTGGAAATCAGTGTTTCGTCAGTTTTTTTCTAAAAAATCTACAGTCTTTATGCTCGTGATTTTAGTGACAGTCT
TGATGATGAGCTTTATTTATCCAATGTTTGCCAACTACGACTTTAATGACGTTAGTAATATCAATGACTTTTCAAAGCGT
TATATTTGGCCGAATGCAGAGTACTGGTTTGGAACCGACAAAAATGGGCAATCTCTGTTTGATGGTGTTTGGTATGGGGC
ACGTAATTCTATTTTAATCTCAGTTATAGCGACACTAATTAATATCACCATTGGGGTAGTGTTAGGAGCCATATGGGGAG
TTTCTAAAGCATTTGATAAAGTTATGATTGAAATTTATAACATTATCTCAAATATCCCTTCTATGCTTATTATCATTGTT
TTGACCTATTCATTAGGTGCAGGATTTTGGAATTTGATTCTAGCTTTCTGTATCACTGGATGGATTGGTGTCGCCTACTC
CATCCGTGTTCAAATCTTGCGTTACCGTGATTTAGAATACAACCTTGCTAGTCAAACTTTGGGAACACCAATGTACAAGA
TTGCTGTTAAGAACCTCCTGCCTCAATTGATTTCAGTTATCATGACTATGTTGTCACAAATGCTGCCAGTTTATGTATCT
TCTGAGGCCTTCTTATCCTTCTTTGGGATTGGTTTACCAACCACCACTCCAAGTTTAGGACGTTTGATTGCTAATTATTC
AAGCAACTTAACAACAAATGCCTACCTCTTTTGGATTCCCTTAGTAACATTGATTTTAGTATCGTTACCACTATACATTG
TCGGACAAAACTTGGCTGATGCCAGTGACCCACGTTCACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

73.377

100

0.734
  amiD Streptococcus thermophilus LMG 18311

72.727

100

0.727
  amiD Streptococcus thermophilus LMD-9

72.727

100

0.727

Multiple sequence alignment