Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABDZ24_RS03190 Genome accession   NZ_CP155623
Coordinates   543918..544448 (+) Length   176 a.a.
NCBI ID   WP_002108911.1    Uniprot ID   -
Organism   Bacillus paramobilis strain N24509     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 538918..549448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDZ24_RS03160 (ABDZ24_03165) spo0J 539366..540217 (+) 852 WP_001051815.1 stage 0 sporulation protein Spo0J -
  ABDZ24_RS03165 (ABDZ24_03170) yyaC 540238..540834 (-) 597 WP_061679595.1 spore protease YyaC -
  ABDZ24_RS03170 (ABDZ24_03175) - 541094..541975 (+) 882 WP_000365106.1 mechanosensitive ion channel family protein -
  ABDZ24_RS03175 (ABDZ24_03180) - 541996..542193 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  ABDZ24_RS03180 (ABDZ24_03185) ychF 542308..543408 (+) 1101 WP_000524656.1 redox-regulated ATPase YchF -
  ABDZ24_RS03185 (ABDZ24_03190) rpsF 543601..543891 (+) 291 WP_001233781.1 30S ribosomal protein S6 -
  ABDZ24_RS03190 (ABDZ24_03195) ssbA 543918..544448 (+) 531 WP_002108911.1 single-stranded DNA-binding protein Machinery gene
  ABDZ24_RS03195 (ABDZ24_03200) rpsR 544493..544726 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  ABDZ24_RS03200 (ABDZ24_03205) - 544808..545743 (+) 936 WP_000799152.1 YybS family protein -
  ABDZ24_RS03205 (ABDZ24_03210) - 545822..547795 (+) 1974 WP_001113902.1 DHH family phosphoesterase -
  ABDZ24_RS03210 (ABDZ24_03215) rplI 547792..548238 (+) 447 WP_000864239.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19108.87 Da        Isoelectric Point: 4.9222

>NTDB_id=998113 ABDZ24_RS03190 WP_002108911.1 543918..544448(+) (ssbA) [Bacillus paramobilis strain N24509]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNQGNSGFTKNDDPF
SNVGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=998113 ABDZ24_RS03190 WP_002108911.1 543918..544448(+) (ssbA) [Bacillus paramobilis strain N24509]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGGAACCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTT
TCAAATGTAGGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.222

100

0.739
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.381

Multiple sequence alignment