Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABDZ23_RS11370 | Genome accession | NZ_CP155621 |
| Coordinates | 2522907..2523425 (-) | Length | 172 a.a. |
| NCBI ID | WP_007966163.1 | Uniprot ID | A0A031FLF5 |
| Organism | Pseudomonas koreensis strain BM06 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2517907..2528425
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABDZ23_RS11335 (ABDZ23_11335) | - | 2518266..2518847 (+) | 582 | WP_247268931.1 | YjfI family protein | - |
| ABDZ23_RS11340 (ABDZ23_11340) | - | 2518865..2519563 (+) | 699 | WP_115988786.1 | PspA/IM30 family protein | - |
| ABDZ23_RS11345 (ABDZ23_11345) | - | 2519761..2520411 (+) | 651 | WP_247268932.1 | DUF2491 family protein | - |
| ABDZ23_RS11350 (ABDZ23_11350) | - | 2520427..2520852 (+) | 426 | WP_095139066.1 | DUF350 domain-containing protein | - |
| ABDZ23_RS11355 (ABDZ23_11355) | - | 2520870..2521547 (+) | 678 | WP_095139064.1 | DUF1190 domain-containing protein | - |
| ABDZ23_RS11360 (ABDZ23_11360) | - | 2521550..2522707 (+) | 1158 | WP_247268933.1 | glutathionylspermidine synthase family protein | - |
| ABDZ23_RS11365 (ABDZ23_11365) | - | 2522723..2522812 (-) | 90 | Protein_2228 | metal ABC transporter ATP-binding protein | - |
| ABDZ23_RS11370 (ABDZ23_11370) | ssb | 2522907..2523425 (-) | 519 | WP_007966163.1 | single-stranded DNA-binding protein | Machinery gene |
| ABDZ23_RS11375 (ABDZ23_11375) | - | 2523435..2524832 (-) | 1398 | WP_027614250.1 | MFS transporter | - |
| ABDZ23_RS11380 (ABDZ23_11380) | uvrA | 2525024..2527858 (+) | 2835 | WP_027614251.1 | excinuclease ABC subunit UvrA | - |
| ABDZ23_RS11385 (ABDZ23_11385) | bfr | 2527922..2528386 (-) | 465 | WP_003228714.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19125.28 Da Isoelectric Point: 5.9314
>NTDB_id=998090 ABDZ23_RS11370 WP_007966163.1 2522907..2523425(-) (ssb) [Pseudomonas koreensis strain BM06]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=998090 ABDZ23_RS11370 WP_007966163.1 2522907..2523425(-) (ssb) [Pseudomonas koreensis strain BM06]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAAAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCTCCGCAACAGCGTCCAGCCCCGGCTCCACAGCAGGCTGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATCCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAAAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACAGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGCC
AACAGGCTCCGCGTCCGCAGCAGTCGGCTCCGCAACAGCGTCCAGCCCCGGCTCCACAGCAGGCTGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.923 |
100 |
0.616 |
| ssb | Glaesserella parasuis strain SC1401 |
49.451 |
100 |
0.523 |
| ssb | Neisseria meningitidis MC58 |
47.514 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.5 |