Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABDX87_RS17405 Genome accession   NZ_CP155619
Coordinates   3928792..3930132 (-) Length   446 a.a.
NCBI ID   WP_346828998.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3923792..3935132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS17370 (ABDX87_17370) - 3923970..3924521 (-) 552 WP_346828991.1 PilX N-terminal domain-containing pilus assembly protein -
  ABDX87_RS17375 (ABDX87_17375) - 3924518..3925309 (-) 792 WP_346828992.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABDX87_RS17380 (ABDX87_17380) pilV 3925309..3925848 (-) 540 WP_346828993.1 type IV pilus modification protein PilV -
  ABDX87_RS17385 (ABDX87_17385) - 3925848..3926645 (-) 798 WP_346828994.1 GspH/FimT family pseudopilin -
  ABDX87_RS17390 (ABDX87_17390) thiO 3926605..3927708 (+) 1104 WP_346828995.1 glycine oxidase ThiO -
  ABDX87_RS17395 (ABDX87_17395) - 3927705..3928127 (-) 423 WP_346828996.1 hypothetical protein -
  ABDX87_RS17400 (ABDX87_17400) - 3928144..3928713 (-) 570 WP_346828997.1 nucleotidyltransferase domain-containing protein -
  ABDX87_RS17405 (ABDX87_17405) pilR 3928792..3930132 (-) 1341 WP_346828998.1 sigma-54 dependent transcriptional regulator Regulator
  ABDX87_RS17410 (ABDX87_17410) pilS 3930135..3931727 (-) 1593 WP_346828999.1 ATP-binding protein Regulator
  ABDX87_RS17415 (ABDX87_17415) - 3931717..3931956 (-) 240 WP_346829000.1 PP0621 family protein -
  ABDX87_RS17420 (ABDX87_17420) - 3932112..3933134 (-) 1023 WP_346829001.1 outer membrane protein assembly factor BamD -
  ABDX87_RS17425 (ABDX87_17425) rluD 3933286..3934248 (+) 963 WP_346829002.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABDX87_RS17430 (ABDX87_17430) pgeF 3934257..3934985 (+) 729 WP_346833551.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49981.16 Da        Isoelectric Point: 6.6681

>NTDB_id=998043 ABDX87_RS17405 WP_346828998.1 3928792..3930132(-) (pilR) [Pseudomonas abietaniphila strain BHJ04]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAQDWLAREPFDLCLTDMRLPDGNGLELVQHIQKRHTQVPVA
MITAHGSVDTAIHALKAGAFDFLTKPVDLGRLRELVGSALRLHASPSNENTIDNRLLGNSPPMQALRKQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPTELMESEFFGHRKGSFTGAHEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKSVRAVGGQQEQVVDVRVLCATHKDLGVEVAAQRFRQDLYYRLNVIELRVPPLRERREDIEEIANN
VLRRLAESAGQPPARLTSQALAALKGYRFPGNVRELENMLERAYTLCENDQINADDLRLAEPVSASEQDGPSLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=998043 ABDX87_RS17405 WP_346828998.1 3928792..3930132(-) (pilR) [Pseudomonas abietaniphila strain BHJ04]
ATGAGCCCACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGACATTCGCGAATTGCTGGAGATCACTCTCGGGCGAAT
GAAACTGGACACGCGCAGTGCGCGCAACGTCAAGGAAGCGCAGGACTGGCTCGCGCGCGAGCCCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGGAACGGCCTTGAGCTGGTGCAGCATATCCAGAAGCGCCATACCCAAGTGCCCGTGGCG
ATGATCACTGCCCACGGCAGCGTTGACACAGCGATCCATGCCCTGAAAGCCGGGGCGTTCGACTTCCTCACCAAACCGGT
GGATTTAGGCCGTCTGCGCGAGCTGGTAGGCAGCGCATTGCGCCTGCACGCCTCGCCTTCCAACGAGAACACCATCGACA
ATCGCCTGCTCGGCAACTCACCACCCATGCAGGCGTTGCGCAAGCAGATCGGCAAACTGGCCCGCAGTCAGGCGCCGATC
TACATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCGCGCCTGATTCACGAACAAGGACCGCGCATCGACAAACC
GTTCGTGCCGGTCAACTGCGGGGCTATCCCTACAGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGGAAGGGCAGCTTCA
CCGGCGCTCACGAAGACAAGCCCGGTCTGTTTCAGGCAGCCCACGGCGGTACGCTTTTCCTCGACGAAGTCGCCGACCTG
CCGCTGGCGATGCAAGTCAAACTGCTGCGTGCCATCCAGGAAAAATCCGTGCGTGCCGTCGGCGGCCAGCAGGAGCAAGT
GGTGGACGTTCGCGTCTTGTGCGCCACCCACAAAGACCTCGGCGTCGAAGTGGCTGCCCAACGCTTCCGCCAGGATTTGT
ATTACCGCCTCAACGTGATTGAACTGCGCGTGCCACCGTTGCGCGAACGTCGCGAAGACATCGAGGAGATCGCCAATAAC
GTGCTTCGGCGCCTCGCAGAAAGCGCTGGCCAACCGCCTGCGCGCCTGACTTCCCAGGCTTTGGCTGCGCTGAAGGGCTA
TCGTTTTCCAGGCAATGTTCGCGAGCTGGAGAACATGCTCGAACGCGCGTACACGCTGTGCGAAAACGACCAGATCAACG
CCGACGACCTGCGACTTGCAGAGCCTGTCAGCGCCAGCGAACAAGACGGACCGAGTCTGGCCGATATCGACAACCTGGAA
GACTACCTCGAAAGCATCGAGCGCAAGCTGATCCTCCAGGCGCTCGAAGAAACCCGCTGGAACCGCACAGCCGCCGCGCA
GCGATTGAACCTGACGTTCAGATCGATGCGCTATCGGTTGAAGAAGCTGGGGTTGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

81.49

99.327

0.809
  pilR Acinetobacter baumannii strain A118

49.02

100

0.504
  luxO Vibrio cholerae strain A1552

38.17

100

0.383

Multiple sequence alignment