Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABDX87_RS17410 Genome accession   NZ_CP155619
Coordinates   3930135..3931727 (-) Length   530 a.a.
NCBI ID   WP_346828999.1    Uniprot ID   -
Organism   Pseudomonas abietaniphila strain BHJ04     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3925135..3936727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDX87_RS17380 (ABDX87_17380) pilV 3925309..3925848 (-) 540 WP_346828993.1 type IV pilus modification protein PilV -
  ABDX87_RS17385 (ABDX87_17385) - 3925848..3926645 (-) 798 WP_346828994.1 GspH/FimT family pseudopilin -
  ABDX87_RS17390 (ABDX87_17390) thiO 3926605..3927708 (+) 1104 WP_346828995.1 glycine oxidase ThiO -
  ABDX87_RS17395 (ABDX87_17395) - 3927705..3928127 (-) 423 WP_346828996.1 hypothetical protein -
  ABDX87_RS17400 (ABDX87_17400) - 3928144..3928713 (-) 570 WP_346828997.1 nucleotidyltransferase domain-containing protein -
  ABDX87_RS17405 (ABDX87_17405) pilR 3928792..3930132 (-) 1341 WP_346828998.1 sigma-54 dependent transcriptional regulator Regulator
  ABDX87_RS17410 (ABDX87_17410) pilS 3930135..3931727 (-) 1593 WP_346828999.1 ATP-binding protein Regulator
  ABDX87_RS17415 (ABDX87_17415) - 3931717..3931956 (-) 240 WP_346829000.1 PP0621 family protein -
  ABDX87_RS17420 (ABDX87_17420) - 3932112..3933134 (-) 1023 WP_346829001.1 outer membrane protein assembly factor BamD -
  ABDX87_RS17425 (ABDX87_17425) rluD 3933286..3934248 (+) 963 WP_346829002.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABDX87_RS17430 (ABDX87_17430) pgeF 3934257..3934985 (+) 729 WP_346833551.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58571.55 Da        Isoelectric Point: 6.8850

>NTDB_id=998044 ABDX87_RS17410 WP_346828999.1 3930135..3931727(-) (pilS) [Pseudomonas abietaniphila strain BHJ04]
MTAETLSLATPQAQRILRLYHLYRLSIGILLVLLISSSLDAELLQLADIELFRTGCWLYLVFNILVVVLLERPSRQGQLF
TLAMADALTLCALFYAGGGAPSGIGNLIVASVAISNVLLRQRSGLLIAAVSAIGIIYLTFFISYHQPAAANHFVQAGSLG
ALCFAAALLVQTLARRLQLSEDIAEKRAADVDNLEQLNALILQRMRTGILVLDSNRQVLLANQSALTLLGHQHLLGEVID
PYSPQLVERLRQWLINPSMASRSMTTSAIGPVLRPGFIALTRGSHRHTLVFLDDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLHESEELSGPDRRLSEIIQDQSRRMNLVIENVLQLSRRRQTEPHLLDLKQWLEHFVSDLRSRLSAD
QSVHLETGDGTLTTRMDAEQLQQVLTNLVQNGLRYSGQLHEKAQVWLKLFHDPHSELPSLEVLDDGPGVATEHLTKIFEP
FFTTESKGTGLGLYLSRELCESNQANLDYTPREGGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=998044 ABDX87_RS17410 WP_346828999.1 3930135..3931727(-) (pilS) [Pseudomonas abietaniphila strain BHJ04]
GTGACCGCTGAAACCCTGTCGCTGGCCACACCCCAGGCCCAGCGCATTCTGCGGCTGTATCACTTGTACCGTCTGAGCAT
CGGCATCCTGCTGGTGCTGTTGATTTCCAGCAGCCTCGATGCCGAACTGCTTCAGCTGGCCGACATCGAACTGTTCCGCA
CCGGTTGCTGGCTGTACCTCGTCTTCAACATCCTCGTGGTCGTGTTGCTTGAGCGGCCCAGTCGTCAGGGACAACTGTTC
ACCCTGGCCATGGCCGACGCGCTGACGCTGTGCGCATTGTTTTACGCCGGCGGTGGCGCCCCGAGCGGCATCGGCAACCT
GATCGTGGCCTCGGTGGCCATCAGCAACGTGCTGTTGCGTCAGCGCAGCGGGCTCCTGATTGCCGCCGTTTCAGCCATCG
GCATCATCTACCTGACCTTCTTCATCAGTTATCACCAGCCTGCGGCAGCCAATCACTTCGTCCAGGCGGGTTCACTCGGC
GCCTTGTGTTTTGCGGCCGCGCTGCTGGTTCAAACGCTGGCTCGCCGGCTTCAGCTCAGCGAAGACATCGCCGAGAAGCG
CGCGGCCGATGTCGATAACCTGGAGCAACTCAACGCCCTGATCCTGCAGCGCATGCGCACAGGCATTCTGGTGCTCGACT
CGAACCGCCAGGTGCTGCTCGCCAACCAGAGCGCATTGACCTTGCTCGGCCATCAGCACCTGCTGGGTGAAGTCATCGAT
CCGTACTCACCCCAACTGGTCGAGCGTTTGCGCCAATGGTTGATCAACCCTTCCATGGCGTCGCGCAGCATGACCACGTC
GGCGATCGGCCCCGTGCTGCGCCCGGGTTTCATTGCTCTGACCCGTGGCAGCCACCGGCACACCCTGGTGTTTCTCGATG
ACCTTTCGCAGATCTCCCAACAGGCCCAACAACTCAAGCTTGCCGCACTGGGCAGGCTGACAGCCGGCATCGCCCACGAG
ATCCGTAACCCACTGGGCGCCATCAGCCATGCGGCGCAGCTGCTCCACGAGTCAGAGGAACTGAGCGGGCCGGACCGGCG
TCTCAGTGAAATCATTCAAGATCAATCGCGACGGATGAATCTGGTGATCGAGAACGTCTTGCAGCTGTCCCGCCGACGTC
AGACCGAACCCCACCTGCTCGACCTCAAGCAGTGGCTCGAACACTTCGTCAGCGACCTGCGCAGTCGGCTGTCCGCCGAC
CAGTCTGTACACCTGGAAACCGGCGACGGCACCCTGACCACGCGCATGGACGCCGAGCAATTGCAGCAGGTCCTGACCAA
TCTGGTGCAGAACGGCCTGCGCTACAGCGGCCAGCTGCACGAAAAAGCCCAGGTCTGGCTCAAACTGTTCCATGATCCAC
ACAGCGAGTTGCCCAGCCTGGAAGTGCTGGACGACGGTCCCGGCGTCGCGACCGAACACCTGACGAAGATTTTCGAGCCT
TTTTTCACCACCGAAAGCAAAGGAACCGGCCTGGGCCTGTACCTTTCGCGTGAGTTGTGCGAAAGCAATCAGGCGAACCT
GGATTACACACCACGGGAAGGTGGCGGCAGCTGCATGCGGATCACCTTCGCCCATCCGTTCAAATTGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.653

100

0.638

Multiple sequence alignment