Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFB52_RS25025 Genome accession   NZ_CP155585
Coordinates   5545499..5546845 (+) Length   448 a.a.
NCBI ID   WP_129972811.1    Uniprot ID   -
Organism   Pseudomonas sp. 9.2(2024)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5540499..5551845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFB52_RS25000 (ABFB52_25000) pgeF 5540714..5541436 (-) 723 WP_129972813.1 peptidoglycan editing factor PgeF -
  ABFB52_RS25005 (ABFB52_25005) rluD 5541433..5542395 (-) 963 WP_085747728.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABFB52_RS25010 (ABFB52_25010) - 5542548..5543564 (+) 1017 WP_085747727.1 outer membrane protein assembly factor BamD -
  ABFB52_RS25015 (ABFB52_25015) - 5543690..5543923 (+) 234 WP_085747726.1 PP0621 family protein -
  ABFB52_RS25020 (ABFB52_25020) pilS 5543913..5545502 (+) 1590 WP_129972812.1 ATP-binding protein Regulator
  ABFB52_RS25025 (ABFB52_25025) pilR 5545499..5546845 (+) 1347 WP_129972811.1 sigma-54 dependent transcriptional regulator Regulator
  ABFB52_RS25030 (ABFB52_25030) thiO 5546905..5548005 (-) 1101 WP_085747723.1 glycine oxidase ThiO -
  ABFB52_RS25035 (ABFB52_25035) - 5548062..5548463 (-) 402 WP_039771691.1 type IV pilin protein -
  ABFB52_RS25040 (ABFB52_25040) - 5548479..5551571 (-) 3093 WP_346836109.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50154.44 Da        Isoelectric Point: 6.6657

>NTDB_id=997968 ABFB52_RS25025 WP_129972811.1 5545499..5546845(+) (pilR) [Pseudomonas sp. 9.2(2024)]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNFNEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPSLRERREDIEALA
VHMLKRLANGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNAAAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=997968 ABFB52_RS25025 WP_129972811.1 5545499..5546845(+) (pilR) [Pseudomonas sp. 9.2(2024)]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATTACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATTTCAATGAAGCCCAGGCGCTGCTGCACCGCGAGACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATTCAGCAACGTTATCCACAACTGCCG
GTGGCAATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACACGCCTGCGCGAGCTGGTCGGCTCGGCATTGCGCATGCCGGCGCCGGGCAATGTCTGCACTTCGA
TCGACCGGCGGTTGCTTGGCGACTCTCCGCCGATGCGCAGCCTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCG
CCGGTCTACATCAGCGGCGAGTCCGGCAGTGGCAAGGAACTGGTGGCCCGATTGATTCATGAGCAGGGCCCGCGCGCCAG
CCAGCCATTTGTGCCGGTGAACTGCGGGGCGATTCCGTCTGAGTTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGTGCGGTGGAGGATAAACCGGGGCTGTTTCAAGCGGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGGCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCAACGCACAAGGACCTCGACGCGGAAGTGTCTGCCGAGCGTTTTCGTCAGG
ATCTGTATTACCGGCTCAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GTCCATATGCTCAAGCGCCTGGCCAATGGCACCGGGCAACCGGCTGCACGTCTTCATCCTCATGCCCTAGAGGCGCTGAA
AAACTACCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTTGAGCGGGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCCGAGGATTTACGCCTGAGTGAAGGAAACGCCGCCGCTGAAGGTGGTATTGCCGATCTCACGCAAATCGACAAC
CTGGAAGACTATCTGGAGAGCGTCGAACGCAAACTGATTCTGCAGGCGCTGGAGGAGACTCGCTGGAATCGCACGGCGGC
AGCGCAGCGGTTGAGTCTTTCGTTTCGGTCGATGCGCTACAGGCTGAAGAAGCTGGGTCTGGATTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.91

98.884

0.79
  pilR Acinetobacter baumannii strain A118

48.366

100

0.496
  luxO Vibrio cholerae strain A1552

36.937

99.107

0.366

Multiple sequence alignment