Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABFB52_RS25020 Genome accession   NZ_CP155585
Coordinates   5543913..5545502 (+) Length   529 a.a.
NCBI ID   WP_129972812.1    Uniprot ID   -
Organism   Pseudomonas sp. 9.2(2024)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5538913..5550502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFB52_RS25000 (ABFB52_25000) pgeF 5540714..5541436 (-) 723 WP_129972813.1 peptidoglycan editing factor PgeF -
  ABFB52_RS25005 (ABFB52_25005) rluD 5541433..5542395 (-) 963 WP_085747728.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABFB52_RS25010 (ABFB52_25010) - 5542548..5543564 (+) 1017 WP_085747727.1 outer membrane protein assembly factor BamD -
  ABFB52_RS25015 (ABFB52_25015) - 5543690..5543923 (+) 234 WP_085747726.1 PP0621 family protein -
  ABFB52_RS25020 (ABFB52_25020) pilS 5543913..5545502 (+) 1590 WP_129972812.1 ATP-binding protein Regulator
  ABFB52_RS25025 (ABFB52_25025) pilR 5545499..5546845 (+) 1347 WP_129972811.1 sigma-54 dependent transcriptional regulator Regulator
  ABFB52_RS25030 (ABFB52_25030) thiO 5546905..5548005 (-) 1101 WP_085747723.1 glycine oxidase ThiO -
  ABFB52_RS25035 (ABFB52_25035) - 5548062..5548463 (-) 402 WP_039771691.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58500.33 Da        Isoelectric Point: 6.6677

>NTDB_id=997967 ABFB52_RS25020 WP_129972812.1 5543913..5545502(+) (pilS) [Pseudomonas sp. 9.2(2024)]
MIAEAENADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
ALALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAELRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSARILLGQTHLEGDLID
DHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSLRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVSESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLSIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=997967 ABFB52_RS25020 WP_129972812.1 5543913..5545502(+) (pilS) [Pseudomonas sp. 9.2(2024)]
GTGATCGCTGAGGCCGAAAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCTTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTTCTCGAGAACATCCGCCGCCCAGCCCAGTTGTTC
GCTCTGGCACTGGTCGACATTCTGCTGCTGTGCGGCGTGTTCTACGCAGCGGGCGGTGTGGCCAGTGCGATCGGCAACTT
GCTGATCGTTTCGGTGGCCATCAGCAACACCTTGCTGCGACGACGCATCGGCCTGCTGATCGCCGCCGTCGCCACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGACTATCTGCAGGCCGGCACCCTCGGC
GCCTTGTGCTTTGCCGCCTCGCTGCTGGTGCAAGGGTTGATCCGTCGTCTCGAAGTCAGTGAGAACCTGGCCGAGTTGCG
CGCCAGCGAGGTCGTGGGGCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAGCGCCGGGTGCAACTGGCCAACCACAGCGCCAGGATCCTGCTGGGCCAAACGCATCTTGAAGGTGACTTGATCGAC
GACCACTCGAGCGCATTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCGC
CGGCAACGGCCTGGAGCTGCAGCCGAGCTTCATCGCCCTGGAACAGAGCCCGAATCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAGCAATTGAAACTGGCCGCGCTGGGCCGGCTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCTGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCGCAACGGCTGGATCTCAAACCGTGGCTGGAGCAGTTCGTCAGCGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCATCTGCACATCGGCCCGGGGGATTTCCGCACGTTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCCCTTTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGTCCATCGACCCCG
AGAGCACGCTGGCCGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCGCTGGATCAGCAGGCTCACCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.566

100

0.607

Multiple sequence alignment