Detailed information NTG0997960

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABFB52_RS21645
• Genome accession: NZ_CP155585
• Coordinates: 4820270..4822513 (-)
• Length: 747 a.a.
• NCBI ID: WP_129973698.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 9.2(2024)
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4815270..4827513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFB52_RS21610 (ABFB52_21610)	murB	4815670..4816689 (-)	1020	WP_129973699.1	UDP-N-acetylmuramate dehydrogenase	-
ABFB52_RS21615 (ABFB52_21615)	-	4816686..4817150 (-)	465	WP_064598568.1	low molecular weight protein-tyrosine-phosphatase	-
ABFB52_RS21620 (ABFB52_21620)	kdsB	4817150..4817914 (-)	765	WP_064383500.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABFB52_RS21625 (ABFB52_21625)	-	4817911..4818096 (-)	186	WP_003174668.1	Trm112 family protein	-
ABFB52_RS21630 (ABFB52_21630)	lpxK	4818121..4819131 (-)	1011	WP_085745065.1	tetraacyldisaccharide 4'-kinase	-
ABFB52_RS21635 (ABFB52_21635)	-	4819131..4819559 (-)	429	WP_007950767.1	biopolymer transporter ExbD	-
ABFB52_RS21640 (ABFB52_21640)	exbB	4819556..4820191 (-)	636	WP_165369563.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABFB52_RS21645 (ABFB52_21645)	comA	4820270..4822513 (-)	2244	WP_129973698.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABFB52_RS21650 (ABFB52_21650)	-	4822650..4823168 (+)	519	WP_007950764.1	DUF2062 domain-containing protein	-
ABFB52_RS21655 (ABFB52_21655)	-	4823223..4824002 (-)	780	WP_007950763.1	ABC transporter permease	-
ABFB52_RS21660 (ABFB52_21660)	-	4823999..4824931 (-)	933	WP_129973697.1	ABC transporter ATP-binding protein	-
ABFB52_RS21665 (ABFB52_21665)	-	4825065..4825688 (-)	624	WP_102686518.1	glutathione S-transferase	-
ABFB52_RS21670 (ABFB52_21670)	-	4825732..4826391 (-)	660	WP_129973696.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82039.14 Da
• Isoelectric Point: 10.3033

>NTDB_id=997960 ABFB52_RS21645 WP_129973698.1 4820270..4822513(-) (comA) [Pseudomonas sp. 9.2(2024)]
MRTGMMALAVGLLAPVFLPALPPVGLLLVLPWVALMLLPFRSYPLAFLLLGFTWAGFNAQMALNDRLPSRLDGETRWVEG
RVVGLPQNAEGVVRFELVDARSRHEKLPSLMRLAWYAGPEIKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARVGIWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFIAVAVLIFTFGGRLGPSRWWQTWTRAQWLIAIGLCPVLVALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALALIAGRWPAWVPTTMEWWVWALGGLGAVLLLLPRGVPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVAKGLPVSRVISGDPPGLPEALNAEVCESGRQWQWDGVAFHLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLNSALAVQTRWLQAPHHGSRSSSSMALLKALQPQAVLISRGQGNSFGHPHPTVIARYRKQGIHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=997960 ABFB52_RS21645 WP_129973698.1 4820270..4822513(-) (comA) [Pseudomonas sp. 9.2(2024)]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCACCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGGTTATT
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTGCTGCTTGGATTTACAT
GGGCGGGTTTCAACGCGCAGATGGCGTTGAATGACCGGCTGCCTTCCCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGA
CGGGTCGTCGGCTTGCCGCAGAATGCCGAGGGCGTCGTGCGCTTCGAACTGGTCGATGCGCGCTCGCGTCACGAGAAACT
GCCGTCGCTGATGCGTCTGGCGTGGTACGCCGGGCCTGAGATCAAAAGTGGCGAACGCTGGCGACTGGCAGTCAAGCTCA
AGCGCCCCGGTGGCCTGCTCAATCCGGATGCGTTTGATTACGAAGCCTGGCTGCTGGCGCAGCGCATCGGCGCTACCGGG
ACGGTGAAGGATGGTCAGCGCCTGGCGCCGGCGCAGTGGGCCTGGCGTGACAGCATTCGCCAGCGCCTGCTTGCGGTGGA
TGCCCAGGGACGCAACGGCGCCCTGGCTGCGTTGGTGCTCGGCGATGGCTCCGGGCTCAGTCGTGAGGACTGGCAGACCC
TGCAGGACACCGGCACCGTACACCTGCTGGTGATTTCCGGTCAGCACATCGGGCTGTTGGCGGCGTTGATGTATGCGCTG
GTCGCCGGGCTGGCGCGGGTCGGGATCTGGCCGTTGCGTTGGCCTTGGCTGCCCTGGGCGTGCGGTCTGGCGTTCGCGGC
GGCGCTGGGTTACGGCCTGCTGGCCGGATTCGACGTGCCGGTGCGGCGGGCCTGCGTGATGGTTGCGCTGGTGTTGTTGT
GGCGTTTGCGCTTTCGCCATCTCGGTGCCTGGTGGCCGTTGCTGCTGGCCTTTAATGGTGTGTTGTTGATGGATCCGCTG
GCCAGTCTGCGTCCGGGGTTGTGGCTGTCCTTTATCGCGGTCGCCGTGCTGATCTTCACCTTCGGTGGCCGTCTGGGGCC
ATCGCGCTGGTGGCAGACCTGGACGCGTGCGCAGTGGCTGATTGCGATCGGCTTGTGCCCGGTGCTGGTGGCGTTGAGTC
TGCCGATCAGCCTCAGCGGACCACTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGTTG
CTGGGGACATTGCTGTTGCCGATTCCCTATGTCGGGGAAGGGCTGCTGTGGCTGGCCGGTGGACTGATCGATGGATTGTT
CCGGGCGCTGGCCCTGATTGCCGGGCGTTGGCCAGCGTGGGTGCCGACGACGATGGAGTGGTGGGTCTGGGCGCTGGGAG
GTCTTGGTGCAGTGCTGTTATTGCTACCTCGGGGCGTTCCCTTGCGTCCTTTGGGCTGGCCATTGCTGCTGGTGCTGGCA
TTTCCGCCTCGAGAGCGTCTGGCCGAAGGCGTGGCCGATGTCTGGCAACTGGATGTCGGCCAAGGCCTGGCAATTCTGAT
CCGCACCCGACATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGCGACTTCGACCTCGGCGAGCGAGTGGTGCTGC
CGGCATTGCGCAAACTGGGGGTGGAACACCTCGATCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCGGGTGGCGCA
CTCGCAGTGGCGAAAGGATTGCCGGTCAGCCGGGTCATCAGCGGCGATCCGCCGGGGTTGCCCGAAGCGCTGAATGCCGA
GGTCTGTGAAAGTGGTCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAATGGGCCGACGCCCACGACAGTA
ATCAGCGTTCCTGCGTGTTGCAGATCGAAGCCAACGGTGAGCGGTTGCTGCTGACCGGCGACATCGACAGCGCCGCCGAA
CGGGACCTGCTCAACAGCGCGCTGGCAGTTCAAACCCGGTGGCTGCAAGCCCCGCACCATGGCAGCCGCAGTTCCTCATC
GATGGCCTTGCTCAAGGCTTTGCAGCCACAGGCCGTGCTGATTTCCCGAGGGCAGGGCAATTCGTTCGGCCACCCGCACC
CGACGGTCATTGCCCGCTACCGCAAACAGGGCATACACATCCATGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCAATGCGTCAACAACGCCGGTTCTGGCGCGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (25-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.282	96.252	0.609
comA	Ralstonia pseudosolanacearum GMI1000	34.738	100	0.364