Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABFB52_RS21640 Genome accession   NZ_CP155585
Coordinates   4819556..4820191 (-) Length   211 a.a.
NCBI ID   WP_165369563.1    Uniprot ID   -
Organism   Pseudomonas sp. 9.2(2024)     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4814556..4825191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFB52_RS21605 (ABFB52_21605) - 4814952..4815422 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  ABFB52_RS21610 (ABFB52_21610) murB 4815670..4816689 (-) 1020 WP_129973699.1 UDP-N-acetylmuramate dehydrogenase -
  ABFB52_RS21615 (ABFB52_21615) - 4816686..4817150 (-) 465 WP_064598568.1 low molecular weight protein-tyrosine-phosphatase -
  ABFB52_RS21620 (ABFB52_21620) kdsB 4817150..4817914 (-) 765 WP_064383500.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABFB52_RS21625 (ABFB52_21625) - 4817911..4818096 (-) 186 WP_003174668.1 Trm112 family protein -
  ABFB52_RS21630 (ABFB52_21630) lpxK 4818121..4819131 (-) 1011 WP_085745065.1 tetraacyldisaccharide 4'-kinase -
  ABFB52_RS21635 (ABFB52_21635) - 4819131..4819559 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  ABFB52_RS21640 (ABFB52_21640) exbB 4819556..4820191 (-) 636 WP_165369563.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABFB52_RS21645 (ABFB52_21645) comA 4820270..4822513 (-) 2244 WP_129973698.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABFB52_RS21650 (ABFB52_21650) - 4822650..4823168 (+) 519 WP_007950764.1 DUF2062 domain-containing protein -
  ABFB52_RS21655 (ABFB52_21655) - 4823223..4824002 (-) 780 WP_007950763.1 ABC transporter permease -
  ABFB52_RS21660 (ABFB52_21660) - 4823999..4824931 (-) 933 WP_129973697.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22899.03 Da        Isoelectric Point: 6.8770

>NTDB_id=997959 ABFB52_RS21640 WP_165369563.1 4819556..4820191(-) (exbB) [Pseudomonas sp. 9.2(2024)]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=997959 ABFB52_RS21640 WP_165369563.1 4819556..4820191(-) (exbB) [Pseudomonas sp. 9.2(2024)]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGTGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCGGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATCGCCGCCATGTCGCCGCTGCTCGGTCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGCTCGGGAATGACCACCAATGCTGCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACTGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment