Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABFB11_RS18080 Genome accession   NZ_CP155580
Coordinates   3912757..3913815 (-) Length   352 a.a.
NCBI ID   WP_049432640.1    Uniprot ID   A0A2J0SZ06
Organism   Stenotrophomonas maltophilia isolate S62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3907757..3918815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFB11_RS18060 (ABFB11_18060) - 3908677..3910644 (-) 1968 WP_100443671.1 type IV pilus secretin PilQ family protein -
  ABFB11_RS18065 (ABFB11_18065) - 3910666..3911199 (-) 534 WP_227843533.1 pilus assembly protein PilP -
  ABFB11_RS18070 (ABFB11_18070) pilO 3911196..3911852 (-) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  ABFB11_RS18075 (ABFB11_18075) - 3911849..3912757 (-) 909 WP_049432643.1 PilN domain-containing protein -
  ABFB11_RS18080 (ABFB11_18080) pilM 3912757..3913815 (-) 1059 WP_049432640.1 pilus assembly protein PilM Machinery gene
  ABFB11_RS18085 (ABFB11_18085) - 3914035..3916458 (+) 2424 WP_049432636.1 penicillin-binding protein 1A -
  ABFB11_RS18090 (ABFB11_18090) - 3916655..3917299 (+) 645 WP_049432633.1 hypothetical protein -
  ABFB11_RS18095 (ABFB11_18095) - 3917423..3918172 (-) 750 WP_049432630.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.38 Da        Isoelectric Point: 4.4047

>NTDB_id=997941 ABFB11_RS18080 WP_049432640.1 3912757..3913815(-) (pilM) [Stenotrophomonas maltophilia isolate S62]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNVVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMIEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=997941 ABFB11_RS18080 WP_049432640.1 3912757..3913815(-) (pilM) [Stenotrophomonas maltophilia isolate S62]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACACTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACGTCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCTGAGAACGTGGAACTGCGCCAGTCCGCGCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
ATCGATCGACGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGGTTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAGGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGTGTCGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGGGGTCTGCCGGAGATGATTGAAGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J0SZ06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

49.716

100

0.497
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment