Detailed information NTG0997937

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABFB11_RS17725
• Genome accession: NZ_CP155580
• Coordinates: 3832250..3833623 (+)
• Length: 457 a.a.
• NCBI ID: WP_005410795.1
• Uniprot ID: A0A854E393
• Organism: Stenotrophomonas maltophilia isolate S62
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3827250..3838623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFB11_RS17710 (ABFB11_17710)	sucD	3828152..3829027 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
ABFB11_RS17715 (ABFB11_17715)	sucC	3829049..3830218 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
ABFB11_RS17720 (ABFB11_17720)	-	3830576..3832189 (+)	1614	WP_049427898.1	ATP-binding protein	-
ABFB11_RS17725 (ABFB11_17725)	pilR	3832250..3833623 (+)	1374	WP_005410795.1	sigma-54 dependent transcriptional regulator	Regulator
ABFB11_RS17730 (ABFB11_17730)	pilB	3833734..3835467 (-)	1734	WP_005414305.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABFB11_RS17735 (ABFB11_17735)	pilA/pilAI	3835690..3836097 (-)	408	WP_049429914.1	pilin	Machinery gene
ABFB11_RS17740 (ABFB11_17740)	-	3836248..3836679 (-)	432	WP_049429913.1	pilin	-
ABFB11_RS17745 (ABFB11_17745)	pilC	3837033..3838292 (+)	1260	WP_049429912.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49515.76 Da
• Isoelectric Point: 6.4407

>NTDB_id=997937 ABFB11_RS17725 WP_005410795.1 3832250..3833623(+) (pilR) [Stenotrophomonas maltophilia isolate S62]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=997937 ABFB11_RS17725 WP_005410795.1 3832250..3833623(+) (pilR) [Stenotrophomonas maltophilia isolate S62]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCGAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGATGGCAACGGCATCGAGCTCGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGATCTGGCCGTGGAGGCGCTGAAGGCCGGCGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCGGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTCGGCCACTCACAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCATGCGCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCGGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGGGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGTCAGGACCTGCCCGAA
CTGGCCGCGGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
GCTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGCGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACTGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGTTGAAGAAGC
TGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

3D structure

• AlphaFold DB: A0A854E393

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.656	99.344	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.079	97.374	0.361