Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHK14_RS00980 Genome accession   NZ_CP155576
Coordinates   175372..176430 (-) Length   352 a.a.
NCBI ID   WP_194092607.1    Uniprot ID   -
Organism   Moraxella sp. K1664     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 170372..181430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHK14_RS00960 (AAHK14_00960) pilQ 170988..173111 (-) 2124 WP_065255320.1 type IV pilus secretin PilQ -
  AAHK14_RS00965 (AAHK14_00965) - 173146..173676 (-) 531 WP_227514659.1 pilus assembly protein PilP -
  AAHK14_RS00970 (AAHK14_00970) pilO 173676..174494 (-) 819 WP_083108163.1 type 4a pilus biogenesis protein PilO -
  AAHK14_RS00975 (AAHK14_00975) - 174491..175372 (-) 882 WP_065255322.1 PilN domain-containing protein -
  AAHK14_RS00980 (AAHK14_00980) comM 175372..176430 (-) 1059 WP_194092607.1 pilus assembly protein PilM Machinery gene
  AAHK14_RS00985 (AAHK14_00985) - 176698..179412 (+) 2715 WP_065255324.1 transglycosylase domain-containing protein -
  AAHK14_RS00990 (AAHK14_00990) - 179481..180431 (-) 951 WP_115246899.1 IS3 family transposase -
  AAHK14_RS00995 (AAHK14_00995) - 180404..180940 (-) 537 WP_065256690.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38406.69 Da        Isoelectric Point: 4.6886

>NTDB_id=997907 AAHK14_RS00980 WP_194092607.1 175372..176430(-) (comM) [Moraxella sp. K1664]
MGLSFSPKGRHLLGLDVSTTSVKLVELTKQQGRLHLKSYGVEPLEPGWVVDKNIVNNEEVGEAIARLVRRSGAGAKDAAT
AVSGSAVITKIIDMETNMSDADREAQIKLDAEQYIPYPLAEVNMDFEVLGPSATDPNLVRVLLAASRSENVEQRVEALLM
GGLTAKVMDIESHAIERAFSLMVDNLPNDPQVVALIDLGHKQSTLYIAKDGEFIYNREQGFGGAQLTEEIQSRYSIPYHD
ATIGKHEHTLPADYHEGVLMPFMENIVQQISRSLQFYFSSSEYNNVDHIILCGGTSALPGLAQMVQQRVGGMVSVANPFE
GMSIDSRIDTVMLQKDAPSLMAACGLALRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=997907 AAHK14_RS00980 WP_194092607.1 175372..176430(-) (comM) [Moraxella sp. K1664]
GTGGGACTATCTTTTTCTCCTAAGGGTCGGCATCTTCTCGGCTTAGATGTCAGTACCACTTCCGTTAAACTTGTTGAACT
AACAAAGCAACAAGGAAGACTTCATTTGAAGTCTTATGGCGTTGAGCCATTAGAGCCGGGCTGGGTTGTTGATAAAAATA
TTGTCAATAACGAAGAAGTGGGCGAGGCCATCGCTCGTTTGGTGCGTCGCTCTGGTGCTGGTGCCAAAGATGCTGCAACG
GCAGTGTCAGGCTCGGCGGTCATCACCAAAATCATTGACATGGAAACAAACATGTCTGATGCTGACCGTGAGGCACAAAT
CAAGCTAGATGCTGAGCAGTATATTCCATATCCACTAGCAGAGGTGAATATGGATTTTGAGGTGCTAGGGCCTTCGGCGA
CCGACCCGAATTTGGTGCGAGTTTTGCTTGCCGCTTCCCGTTCTGAGAACGTGGAACAGCGTGTTGAGGCTCTCTTGATG
GGTGGCTTGACAGCCAAAGTGATGGACATTGAGTCCCATGCCATTGAGCGTGCGTTTAGTTTGATGGTGGATAACCTGCC
TAATGACCCACAGGTGGTGGCACTCATTGATTTGGGGCATAAGCAGTCCACGCTATATATCGCCAAAGACGGTGAGTTCA
TCTATAACCGTGAGCAAGGTTTTGGTGGAGCTCAGCTGACCGAAGAGATTCAGTCACGTTATAGCATTCCTTATCATGAT
GCCACCATTGGCAAGCACGAACATACTTTGCCTGCTGATTATCATGAGGGTGTGCTGATGCCTTTTATGGAAAATATCGT
CCAACAAATCAGCCGTTCATTGCAATTTTATTTCTCATCTAGCGAATACAACAATGTTGATCACATCATTTTGTGTGGTG
GTACTTCGGCATTGCCAGGATTGGCACAGATGGTGCAACAACGTGTTGGGGGCATGGTGTCGGTGGCAAATCCTTTTGAG
GGCATGTCCATTGACTCACGCATTGATACCGTTATGCTCCAAAAAGATGCACCAAGCCTGATGGCAGCGTGTGGATTGGC
TTTAAGGGGGTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

49.138

98.864

0.486
  pilM Acinetobacter baumannii D1279779

48.851

98.864

0.483
  comM Acinetobacter baylyi ADP1

47.977

98.295

0.472
  pilM Legionella pneumophila strain ERS1305867

39.943

98.864

0.395

Multiple sequence alignment