Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPSIL_RS11185 Genome accession   NZ_CP155573
Coordinates   2259618..2259806 (+) Length   62 a.a.
NCBI ID   WP_281253680.1    Uniprot ID   -
Organism   Sporomusa silvacetica DSM 10669     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2254618..2264806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSIL_RS11155 (SPSIL_022400) - 2255458..2256297 (+) 840 WP_373665482.1 polysaccharide deacetylase family protein -
  SPSIL_RS11160 (SPSIL_022410) - 2256484..2257392 (+) 909 WP_094605476.1 EF-hand domain-containing protein -
  SPSIL_RS11165 (SPSIL_022420) - 2257721..2257843 (-) 123 WP_094605475.1 desulforedoxin -
  SPSIL_RS11170 (SPSIL_022430) - 2258054..2258848 (+) 795 WP_094605474.1 ribonuclease HII -
  SPSIL_RS11175 (SPSIL_022440) - 2258873..2259163 (+) 291 WP_094605473.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  SPSIL_RS11180 (SPSIL_022450) - 2259181..2259537 (+) 357 WP_094605472.1 YraN family protein -
  SPSIL_RS11185 comM 2259618..2259806 (+) 189 WP_281253680.1 magnesium chelatase domain-containing protein Machinery gene
  SPSIL_RS11190 (SPSIL_022460) - 2259803..2260078 (+) 276 WP_281253679.1 ATP-binding protein -
  SPSIL_RS11195 (SPSIL_022470) - 2260440..2262281 (+) 1842 WP_094605471.1 spore germination protein -
  SPSIL_RS11200 (SPSIL_022480) - 2262292..2263452 (+) 1161 WP_169717829.1 Ger(x)C family spore germination protein -
  SPSIL_RS11205 (SPSIL_022490) - 2263459..2264583 (+) 1125 WP_094605469.1 endospore germination permease -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 6739.67 Da        Isoelectric Point: 8.9814

>NTDB_id=997874 SPSIL_RS11185 WP_281253680.1 2259618..2259806(+) (comM) [Sporomusa silvacetica DSM 10669]
MDIASGIPAFDIVGLPDTAVRESRERVRAAINNSGFEFSARRITVNLAPADIKKDNIGLVRN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=997874 SPSIL_RS11185 WP_281253680.1 2259618..2259806(+) (comM) [Sporomusa silvacetica DSM 10669]
GTGGATATTGCCAGCGGTATTCCAGCCTTTGATATTGTAGGATTGCCGGACACTGCTGTGCGTGAATCGCGGGAACGCGT
ACGGGCTGCTATTAATAATAGTGGCTTCGAATTTTCTGCCCGGCGCATTACTGTAAATTTAGCACCAGCTGATATTAAGA
AAGATAATATTGGGTTAGTCCGCAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(2-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

66.038

85.484

0.565
  comM Vibrio campbellii strain DS40M4

62.264

85.484

0.532
  comM Legionella pneumophila str. Paris

54.386

91.935

0.5
  comM Legionella pneumophila strain ERS1305867

54.386

91.935

0.5
  comM Haemophilus influenzae Rd KW20

50.943

85.484

0.435
  comM Glaesserella parasuis strain SC1401

50.943

85.484

0.435

Multiple sequence alignment