Detailed information NTG0997798

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ABDK11_RS13615
• Genome accession: NZ_CP155567
• Coordinates: 3135323..3136513 (-)
• Length: 396 a.a.
• NCBI ID: WP_346837058.1
• Uniprot ID: -
• Organism: Microbulbifer sp. SAOS-129_SWC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3130323..3141513

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDK11_RS13600 (ABDK11_13600)	-	3130751..3131893 (+)	1143	WP_346837055.1	AGE family epimerase/isomerase	-
ABDK11_RS13605 (ABDK11_13605)	-	3132047..3133069 (+)	1023	WP_346837056.1	hypothetical protein	-
ABDK11_RS13610 (ABDK11_13610)	-	3133133..3134983 (-)	1851	WP_346837057.1	sodium:proton antiporter	-
ABDK11_RS13615 (ABDK11_13615)	pilU	3135323..3136513 (-)	1191	WP_346837058.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ABDK11_RS13620 (ABDK11_13620)	-	3136632..3137663 (+)	1032	WP_346837059.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
ABDK11_RS13625 (ABDK11_13625)	-	3138134..3138880 (+)	747	WP_346837060.1	SDR family oxidoreductase	-
ABDK11_RS13630 (ABDK11_13630)	-	3139062..3140018 (-)	957	WP_346837061.1	DUF4862 family protein	-

Sequence

Protein

• Length: 396 a.a.
• Molecular weight: 44012.27 Da
• Isoelectric Point: 6.0310

>NTDB_id=997798 ABDK11_RS13615 WP_346837058.1 3135323..3136513(-) (pilU) [Microbulbifer sp. SAOS-129_SWC]
MDFTGYLRVLARNDGSDLYLSTGAPPCAKFQGVLKPLSKEPLGPGQIEKMAMEIMDAEQQEEFKRELEMNLAMTIPNVGR
FRINIFWQRNQVSIVARNIVTEIPKFDDLKLPEILKEVVMAKRGLVLFVGGTGSGKSTSLAALIDHRNTNSGGHIITIED
PVEYVHKHKKSVINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFAETGHLAISTLHANNANQALDRI
VNFFPEERRPQLLMSLSQNIRAFVSQRLVPTVDGKRCAAVEILLGTQTINELILKGEFHSIKEIMQKSENLGMQTFDGAL
FKLYVEGRISHDDAIRNADSANNLRLRIKLYEEGKKPKAAAAASETESREGGQAGGGLELSLEALDEEEELEQFGS

Nucleotide

• Length: 1191 bp

>NTDB_id=997798 ABDK11_RS13615 WP_346837058.1 3135323..3136513(-) (pilU) [Microbulbifer sp. SAOS-129_SWC]
ATGGATTTTACCGGCTACCTTCGCGTACTCGCCAGAAATGACGGTTCCGACCTCTATCTCAGTACCGGTGCACCGCCCTG
TGCCAAATTCCAGGGCGTTCTGAAGCCGCTGAGCAAGGAGCCGCTGGGTCCGGGGCAGATCGAAAAGATGGCGATGGAGA
TCATGGATGCCGAGCAGCAAGAGGAGTTCAAGCGCGAGCTGGAGATGAACCTGGCGATGACGATCCCCAATGTCGGGCGC
TTTCGCATCAACATCTTCTGGCAACGCAATCAGGTATCCATTGTTGCGCGGAATATCGTCACCGAGATTCCCAAGTTCGA
CGACCTGAAGCTGCCGGAAATCCTCAAAGAAGTGGTGATGGCCAAGCGCGGTCTGGTGCTGTTTGTCGGCGGTACCGGTT
CCGGAAAATCCACCTCGCTGGCCGCACTGATCGATCACCGCAACACCAACAGTGGTGGTCATATCATCACCATCGAAGAC
CCGGTGGAGTATGTGCACAAGCACAAGAAGAGTGTGATCAACCAGCGCGAGGTAGGGGTGGATACCCGCAGCTTCCACGC
TGCGCTGAAAAATACCCTGCGCCAGGCGCCGGATGTGATCCTGATCGGGGAGATCCGCGACCGGGAAACCATGGAGCATG
CACTCGCCTTTGCCGAAACCGGCCACCTGGCGATCTCCACGCTCCACGCCAACAACGCTAACCAGGCCCTTGACCGTATT
GTCAACTTCTTTCCCGAGGAGCGCCGCCCGCAGCTGCTGATGTCGCTGTCGCAGAATATCCGCGCGTTTGTGTCCCAGCG
CCTGGTCCCCACCGTCGATGGCAAGCGCTGTGCCGCGGTAGAGATTCTGCTGGGCACCCAGACGATTAACGAGCTGATTC
TCAAGGGTGAGTTCCACTCCATCAAGGAGATCATGCAGAAGTCGGAAAACCTCGGTATGCAGACGTTCGACGGCGCGCTG
TTCAAACTGTACGTGGAAGGCCGTATCAGTCACGACGATGCCATCCGCAATGCCGACTCCGCCAACAACCTGCGCCTGCG
TATCAAACTCTATGAAGAGGGCAAGAAGCCCAAGGCGGCGGCCGCAGCAAGCGAGACGGAAAGCCGCGAAGGCGGTCAGG
CCGGCGGCGGCCTGGAGCTGTCTCTGGAAGCCCTGGACGAAGAGGAAGAACTCGAACAGTTCGGATCCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (107-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	55.367	89.394	0.495
pilU	Acinetobacter baylyi ADP1	53.76	90.657	0.487
pilU	Vibrio cholerae strain A1552	49.714	88.384	0.439
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	85.606	0.369