Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   ELZ51_RS11645 Genome accession   NZ_LR134094
Coordinates   1673816..1674481 (-) Length   221 a.a.
NCBI ID   WP_115246314.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1668816..1679481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS08400 (NCTC4669_01780) - 1668823..1669440 (+) 618 WP_126427044.1 ABC transporter ATP-binding protein -
  ELZ51_RS08405 (NCTC4669_01781) - 1670059..1670814 (-) 756 WP_126427046.1 hypothetical protein -
  ELZ51_RS08410 (NCTC4669_01782) - 1670825..1671520 (-) 696 WP_126427048.1 ABC transporter ATP-binding protein -
  ELZ51_RS08415 (NCTC4669_01783) - 1671533..1671721 (-) 189 WP_003052131.1 helix-turn-helix transcriptional regulator -
  ELZ51_RS08420 (NCTC4669_01784) - 1671726..1672073 (-) 348 WP_003052134.1 hypothetical protein -
  ELZ51_RS08425 - 1672282..1673233 (+) 952 Protein_1615 IS30 family transposase -
  ELZ51_RS08430 (NCTC4669_01786) hpf 1673188..1673736 (-) 549 WP_003052138.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ELZ51_RS11645 (NCTC4669_01787) comFC/cflB 1673816..1674481 (-) 666 WP_115246314.1 ComF family protein Machinery gene
  ELZ51_RS08440 (NCTC4669_01788) comFA/cflA 1674453..1675778 (-) 1326 WP_003052142.1 DEAD/DEAH box helicase Machinery gene
  ELZ51_RS08445 (NCTC4669_01789) - 1675834..1676472 (+) 639 WP_003052144.1 YigZ family protein -
  ELZ51_RS08450 (NCTC4669_01790) cysK 1676576..1677511 (+) 936 WP_126427051.1 cysteine synthase A -
  ELZ51_RS08455 (NCTC4669_01791) - 1677662..1678021 (-) 360 WP_003052148.1 S1 RNA-binding domain-containing protein -
  ELZ51_RS08460 (NCTC4669_01792) - 1678021..1679421 (-) 1401 WP_126427053.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25412.39 Da        Isoelectric Point: 8.7015

>NTDB_id=997795 ELZ51_RS11645 WP_115246314.1 1673816..1674481(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKVSFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHRSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTFSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=997795 ELZ51_RS11645 WP_115246314.1 1673816..1674481(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGGTAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCATAGAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCTTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416

  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412

  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407

  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403

  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403

  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403