Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KZZ19_RS26845 Genome accession   NZ_CP155559
Coordinates   5188987..5189517 (-) Length   176 a.a.
NCBI ID   WP_002108911.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain HSY204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5183987..5194517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZZ19_RS26825 (KZZ19_026820) rplI 5185198..5185644 (-) 447 WP_000864225.1 50S ribosomal protein L9 -
  KZZ19_RS26830 (KZZ19_026825) - 5185641..5187614 (-) 1974 WP_001113891.1 DHH family phosphoesterase -
  KZZ19_RS26835 (KZZ19_026830) - 5187693..5188628 (-) 936 WP_237982528.1 YybS family protein -
  KZZ19_RS26840 (KZZ19_026835) rpsR 5188709..5188942 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  KZZ19_RS26845 (KZZ19_026840) ssbA 5188987..5189517 (-) 531 WP_002108911.1 single-stranded DNA-binding protein Machinery gene
  KZZ19_RS26850 (KZZ19_026845) rpsF 5189544..5189834 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  KZZ19_RS26855 (KZZ19_026850) ychF 5190026..5191126 (-) 1101 WP_000524656.1 redox-regulated ATPase YchF -
  KZZ19_RS26860 (KZZ19_026855) - 5191242..5191439 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  KZZ19_RS26865 (KZZ19_026860) - 5191460..5192317 (-) 858 WP_088098605.1 mechanosensitive ion channel family protein -
  KZZ19_RS26870 (KZZ19_026865) yyaC 5192578..5193174 (+) 597 WP_088098606.1 spore protease YyaC -
  KZZ19_RS26875 (KZZ19_026870) spo0J 5193195..5194046 (-) 852 WP_088098607.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19108.87 Da        Isoelectric Point: 4.9222

>NTDB_id=997778 KZZ19_RS26845 WP_002108911.1 5188987..5189517(-) (ssbA) [Bacillus thuringiensis strain HSY204]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNQGNSGFTKNDDPF
SNVGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=997778 KZZ19_RS26845 WP_002108911.1 5188987..5189517(-) (ssbA) [Bacillus thuringiensis strain HSY204]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTT
TCAAATGTAGGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.222

100

0.739
  ssb Latilactobacillus sakei subsp. sakei 23K

56.742

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386
  ssb Glaesserella parasuis strain SC1401

36.612

100

0.381

Multiple sequence alignment