Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABER85_RS10455 Genome accession   NZ_CP155547
Coordinates   2141776..2142357 (-) Length   193 a.a.
NCBI ID   WP_002062358.1    Uniprot ID   -
Organism   Acinetobacter sp. 8_A20231192     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2136776..2147357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABER85_RS10450 (ABER85_10450) - 2139966..2141423 (+) 1458 WP_002062312.1 hypothetical protein -
  ABER85_RS10455 (ABER85_10455) ssb 2141776..2142357 (-) 582 WP_002062358.1 single-stranded DNA-binding protein Machinery gene
  ABER85_RS10460 (ABER85_10460) - 2142409..2143773 (-) 1365 WP_000980460.1 MFS transporter -
  ABER85_RS10465 (ABER85_10465) - 2143920..2145002 (-) 1083 WP_346534520.1 DUF475 domain-containing protein -
  ABER85_RS10470 (ABER85_10470) tenA 2145265..2145939 (+) 675 WP_150424151.1 thiaminase II -
  ABER85_RS10475 (ABER85_10475) - 2145989..2146330 (-) 342 WP_000263327.1 GlpM family protein -
  ABER85_RS10480 (ABER85_10480) - 2146383..2146736 (-) 354 WP_000580165.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21038.85 Da        Isoelectric Point: 6.4822

>NTDB_id=997657 ABER85_RS10455 WP_002062358.1 2141776..2142357(-) (ssb) [Acinetobacter sp. 8_A20231192]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNSGYGGQGGF
GNGGNSPQGGGFAPKAPQQPTSAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=997657 ABER85_RS10455 WP_002062358.1 2141776..2142357(-) (ssb) [Acinetobacter sp. 8_A20231192]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGCCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATAGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGTAACAGCCCGCAAGGTGGTGGTTTTGCCCCTAAAGCACCACAACAACCAACGTCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51

100

0.528
  ssb Vibrio cholerae strain A1552

44.221

100

0.456
  ssb Neisseria meningitidis MC58

38.071

100

0.389
  ssb Neisseria gonorrhoeae MS11

38.071

100

0.389

Multiple sequence alignment