Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ABC806_RS10960 Genome accession   NZ_CP155539
Coordinates   2134197..2134433 (-) Length   78 a.a.
NCBI ID   WP_000939545.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2129197..2139433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS10930 (ABC806_10925) radA 2129490..2130851 (-) 1362 WP_074017595.1 DNA repair protein RadA Machinery gene
  ABC806_RS10935 (ABC806_10930) - 2130865..2131380 (-) 516 WP_000691236.1 histidine phosphatase family protein -
  ABC806_RS10940 (ABC806_10935) - 2131382..2131825 (-) 444 WP_000701992.1 dUTP diphosphatase -
  ABC806_RS10950 (ABC806_10945) tadA 2132012..2132479 (-) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  ABC806_RS10955 (ABC806_10950) - 2132680..2133966 (-) 1287 WP_000205044.1 adenylosuccinate synthase -
  ABC806_RS10960 (ABC806_10955) comW 2134197..2134433 (-) 237 WP_000939545.1 sigma(X)-activator ComW Regulator
  ABC806_RS10965 (ABC806_10960) - 2134699..2135496 (+) 798 Protein_2125 transposase -
  ABC806_RS10970 (ABC806_10965) - 2135531..2136376 (-) 846 Protein_2126 IS630-like element IS630-Spn1 family transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9658.13 Da        Isoelectric Point: 6.7051

>NTDB_id=997608 ABC806_RS10960 WP_000939545.1 2134197..2134433(-) (comW) [Streptococcus pneumoniae TIGR4]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=997608 ABC806_RS10960 WP_000939545.1 2134197..2134433(-) (comW) [Streptococcus pneumoniae TIGR4]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

100

100

1
  comW Streptococcus pneumoniae D39

100

100

1
  comW Streptococcus pneumoniae R6

100

100

1
  comW Streptococcus pneumoniae TIGR4

100

100

1
  comW Streptococcus mitis SK321

75.641

100

0.756
  comW Streptococcus mitis NCTC 12261

75.325

98.718

0.744

Multiple sequence alignment